Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0564 ATGGAGGATCAGCAAGATGACGTTACACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTTGATAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCAGAAGGTTACAGAAATGATGTTATTCTTGTGGAGACGGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGTCACTGGTTAAAGGATTGAATTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTCTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTTCTGTAGAAGAAACCTCTCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCATGCCGTCCAAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGACTTGAAAGCCGTCTCATGGTGGGTTTGCCAAATGAGGGGGCTATTGGGTGCGTGGATTCATACAAGCATATGTCTGTGACAGTTTGCTTGAATTCTGTGGAACTAGTCGTTGATCTTATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAAGCAATTTTTATGACCCATATTTCCGCTGCCGGGGAAAGCGATTCGGCAGAAAATGACTCCTGTGATTCACCACTAGAACCTAACAGTCCTCTTTATGGTTTTTCAGAGAGAGTTGATCCTGACAGTGCCGAAAGAGATGAGAGCCTTCAATTCCACAGGAAATTTGAAGCAGCTTCAAATGCATATGGTCCTTCATTGCGCAACTTGATGTTTCGATCAAGTACACCACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGTGCGCGGTCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGAAGGTGCTTCAACTTCAGAAGCTCGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTGCGAGCAATGAATGAAACACTGAAGCAAAATCGAATTAATAGTTCAGATGTTCGGAGAAATGATCAAATGGGTTCTCAAAGAGCAATATCATTACCATCATCGCCACATCAATATCAAAAACATGCTCAAACCTCTGATAGAATTGAGCATTCAGCATTTGCCAATGATGAATTAGCCTCAAAATGGACTAACGTTCTTGAATCTTTCTCCTTGAACGACAAACCACTATTACCTTACCCAGAGTGGAACATTGATTACTCAGAACTCACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGCGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACGTCGAAGACTTCTGTAATGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATATTATTTCTGGGTGCATGCACGAAGCCGCCACGCTTATCAATGATTACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAGCTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGAGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGATAGACGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCCGAGCTCTTTCGAAACGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTCTGCACGCTAAGTAGACCGTGGGAGGGCATTCCACCGGAACGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGGCTAGAGATTCCGGAAGGCCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTCGACTGCGAGTACTCGCTTTCTTGA 2343 43.58 MEDQQDDVTPSEQGPSNASWWSSDFVDKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILSLVKGLNSNPAAIIKKIAGLVSDFYKRPILESPAKASVEETSHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVCLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAERDESLQFHRKFEAASNAYGPSLRNLMFRSSTPLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRVRGRSMLSGDRKAFRDFSDDVSTSRSEGASTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRINSSDVRRNDQMGSQRAISLPSSPHQYQKHAQTSDRIEHSAFANDELASKWTNVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENVEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILIDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4931037 4940388 + Hsped.08g05640.1 Hepe08g0564 576536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0564 780 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Hepe08g0564 780 FunFam Serine/threonine-protein kinase isoform 1 515 602 - -
Hepe08g0564 780 Gene3D Transferase(Phosphotransferase) domain 1 603 779 - -
Hepe08g0564 780 Gene3D Phosphorylase Kinase; domain 1 517 602 - -
Hepe08g0564 780 MobiDBLite consensus disorder prediction 364 384 - -
Hepe08g0564 780 MobiDBLite consensus disorder prediction 396 416 - -
Hepe08g0564 780 Pfam Protein tyrosine and serine/threonine kinase 526 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0564 780 CDD STKc_MAP3K-like 530 772 - -
Hepe08g0564 780 ProSiteProfiles Protein kinase domain profile. 524 779 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0564 780 MobiDBLite consensus disorder prediction 8 22 - -
Hepe08g0564 780 ProSitePatterns Protein kinases ATP-binding region signature. 530 551 IPR017441 GO:0005524(InterPro)
Hepe08g0564 780 SUPERFAMILY Protein kinase-like (PK-like) 500 772 IPR011009 -
Hepe08g0564 780 MobiDBLite consensus disorder prediction 447 471 - -
Hepe08g0564 780 PANTHER SERINE-THREONINE PROTEIN KINASE 332 772 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe08g0564 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0564 780 SMART serkin_6 524 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0564 780 MobiDBLite consensus disorder prediction 1 22 - -
Hepe08g0564 780 MobiDBLite consensus disorder prediction 273 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0564 Hepe-Chr8:4931037 Hepe09g1569 Hepe-Chr9:42598454 1.31e-74 dispersed
Hepe04g1854 Hepe-Chr4:73514455 Hepe08g0564 Hepe-Chr8:4931037 3.11e-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73030 PF07714 PK_Tyr_Ser-Thr 1.10E-58 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0564 - - - 0.0