Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0587 ATGAAATTCGAAAACCAGAACCTGAACCAACAGTCTGAACAAATATGCAGGACTATTGAGGTCGATACAATTGATCACCATCTCAGTATTTCATCGGTAGTCGTAATGGAAGCTTCCGAAGATTGCGAGAGGGATGGCGACGGCCTCTACATCCCTCCCCTCAACTTTTCCATGGTTGATAATGCCATTTTCCGCTCCGGCTTCCCTGACTCTGCCAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGTTCCATTATATGTTTATGTCCGGAGCCATATCCAGAACACAACATGGAGTTCCTCAAGTCTAACGGGATTAGATTGTATCAATTTGGAATCGAAAGCTACAAGGAGCCTTTTGTGAACATCCCAGACGATATGATTCGTGAAGCATTGAAAGTTGTCCTTGACGATAGGAATCATCCCGTTCTCATACATTGCAAGAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAATACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAGTTGTTCGATATCTCCGGCTGGAAGCATCTTCCCATGTCATTCTCATGTTCAAAGAGCTGTATGATCATCATCTCATTTCTGGTTCCTTCCAAGACGAAGAAGCTGGAAGCTCAGTGGACAAAGCAGGGCAACCACTCAAAATCAAAGTGGCACCGGATCGCGCTCGACGACCAACGAGACCTTCAAACAATTCCTAGAGACTTCGATTCACCCACCTTAACTCTCTCTGTTGGAATCTCGCTTCGTCTCCAACAGCAACCCATATCCGTCGTCGTCAATTTCCGATCCCTCGGCGACGACGCGATTCCTTTAGTCGACGAACGAATTCGGGGCGTTTCAGATCGTTAA 927 46.6 MKFENQNLNQQSEQICRTIEVDTIDHHLSISSVVVMEASEDCERDGDGLYIPPLNFSMVDNAIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGWKHLPMSFSCSKSCMIIISFLVPSKTKKLEAQWTKQGNHSKSKWHRIALDDQRDLQTIPRDFDSPTLTLSVGISLRLQQQPISVVVNFRSLGDDAIPLVDERIRGVSDR 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5135298 5141091 - Hsped.08g05870.1 Hepe08g0587 576559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0587 308 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791(InterPro)
Hepe08g0587 308 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Hepe08g0587 308 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Hepe08g0587 308 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Hepe08g0587 308 Pfam Tyrosine phosphatase family 50 199 IPR004861 -
Hepe08g0587 308 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 197 IPR029021 -
Hepe08g0587 308 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311(InterPro)
Hepe08g0587 308 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 206 IPR020422 GO:0006470(InterPro)
Hepe08g0587 308 Gene3D Protein tyrosine phosphatase superfamily 50 199 IPR029021 -
Hepe08g0587 308 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 158 IPR000387 GO:0016311(InterPro)
Hepe08g0587 308 CDD PFA-DSP_Siw14 49 196 - -
Hepe08g0587 308 PANTHER TYROSINE-PROTEIN PHOSPHATASE 27 205 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Hepe08g0587 308 FunFam probable tyrosine-protein phosphatase At1g05000 49 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0587 K18045 - - csv:101222170 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1309 Hepe-Chr9:19073193 Hepe08g0587 Hepe-Chr8:5135298 3.12e-72 transposed
Hepe02g0073 Hepe-Chr2:865786 Hepe08g0587 Hepe-Chr8:5135298 3.69e-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g443 . . . . Bpe12g00275 Bpe15g00169 Bma03g01308 Bma08g00533 . . Cma02g00065 Cma20g00235 Car02g00052 Car20g00205 Sed05g1894 . . Bhi05g02097 Tan02g0134 Cmetu05g0487 . . . . Cla02g01771 Cam02g1872 Cec02g1896 Cco02g1936 Clacu02g1854 Cmu02g1800 . . Cone10ag1396 Cone8ag1552 . Lsi10g01569 . Chy11g00950 . Blo04g01214 Blo13g00337 . Bda15g00865 Bpe14g00621 . . . Sed01g0708 Cmo02g00063 Cmo20g00254 . . Car11g01620 . Cpe16g00749 . Bhi10g01060 Tan05g0690 Cmetu11g0212 . Hepe08g0587 . . . . . . . . . Lsi11g01669 Csa06g02393 . Cme11g01505
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83