Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0613 ATGGGAAGAGGTAAGATTGAAATAAAGCGAATTGAAAATACAACAAATCGTCAAGTGACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGCCTTTATGAATACGCCAATAATAGTGTGAGAGGAACGATTGATAGGTACAAGAAAGCATTTGCTGACTCTTCTAATTCCGGATTATCAGTTGCCGAAGCTAATGTACAGTTTTACCAGCAAGAAGCCTCCAAGCTGAAGAGACAAATCCGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTTAGCTCATTGTCATTAAAGGACCTGAAGAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAATGAAACATTGTGTGCAGAGATGGAATTCATGCAGAAAAGGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCCGAACATGAAAGAATACAAGAACAACAAGAAACGAACATGATGCAGCAAAGGGGAAGCTACGAGACAGTGGGGGCTGGTGGGCAGTACGATGAGAATAGAAGTACAAATTATGGGAATAATGTTGGGATTATGGATTCCGACAATCATTATAATCGTCAAGTTCAAGATCATCTCACTGCCCTTCAGCTTGTATAA 714 41.46 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIDRYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQEQQETNMMQQRGSYETVGAGGQYDENRSTNYGNNVGIMDSDNHYNRQVQDHLTALQLV 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5370745 5378774 + Hsped.08g06130.1 Hepe08g0613 576585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0613 237 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 Coils Coil 81 108 - -
Hepe08g0613 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Hepe08g0613 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe08g0613 237 Coils Coil 125 145 - -
Hepe08g0613 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe08g0613 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe08g0613 237 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe08g0613 237 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1114 Hepe-Chr3:63855417 Hepe08g0613 Hepe-Chr8:5370745 6.52e-25 dispersed
Hepe06g0419 Hepe-Chr6:15857538 Hepe08g0613 Hepe-Chr8:5370745 1.66e-23 dispersed
Hepe07g0203 Hepe-Chr7:1805681 Hepe08g0613 Hepe-Chr8:5370745 1.86e-39 dispersed
Hepe07g0369 Hepe-Chr7:3752332 Hepe08g0613 Hepe-Chr8:5370745 4.00e-43 dispersed
Hepe07g1821 Hepe-Chr7:60982597 Hepe08g0613 Hepe-Chr8:5370745 4.13e-75 dispersed
Hepe08g0613 Hepe-Chr8:5370745 Hepe10g0566 Hepe-Chr10:6750873 2.71e-39 dispersed
Hepe01g1587 Hepe-Chr1:81072728 Hepe08g0613 Hepe-Chr8:5370745 5.69e-33 transposed
Hepe01g1645 Hepe-Chr1:81654311 Hepe08g0613 Hepe-Chr8:5370745 7.10e-29 transposed
Hepe06g0424 Hepe-Chr6:16017813 Hepe08g0613 Hepe-Chr8:5370745 4.36e-26 transposed
Hepe07g2118 Hepe-Chr7:65492043 Hepe08g0613 Hepe-Chr8:5370745 1.05e-40 transposed
Hepe04g1949 Hepe-Chr4:74374283 Hepe08g0613 Hepe-Chr8:5370745 9.90e-81 wgd
Hepe08g0613 Hepe-Chr8:5370745 Hepe08g1226 Hepe-Chr8:12855178 2.89e-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56132 PF01486 K-box 1.20E-25 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0613 K09264 - csv:101217987 384.415