Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0630 ATGAAAGAGAATGGAAGAAAACAAGGCACTCTTTCACCATGTGCAGCTTGTAAGCTTCTTCGTCGGAGATGCGCCCAAGATTGCGTTTTCGCTCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGAGCCAGTAATGTCAACAAGATGTTACAGGAACTTCCAGAGCACCAACGAAACGACGCGGTGAGTTCAATGGTGTACGAAGCGAACGCGAGAGTGCGAGATCCGGTGTATGGTTGCGTGGGAGCCATATCATCGTTGCAACAACAAATCGATCTCTTGCAAACACAACTAGCGATCGCACAGGCAGAGGTGGTTCACATGCGGATGCGCCAGTTCCCGTCGTCGTCCTCCAACCCGACGCCGGAAACCGCCTCGCCCTCGGGGAAGATGAACATTCCGGCGCAAAACAAGTCCTATTTTTCCATGGACATGGTTGAGCACGACAACATGGGGGAGTCCTTGTGGTCGTCATGCTAG 504 52.58 MKENGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRNDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSSNPTPETASPSGKMNIPAQNKSYFSMDMVEHDNMGESLWSSC 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5603072 5605142 + Hsped.08g06300.1 Hepe08g0630 576602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0630 167 Coils Coil 92 112 - -
Hepe08g0630 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Hepe08g0630 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 135 - -
Hepe08g0630 167 MobiDBLite consensus disorder prediction 119 142 - -
Hepe08g0630 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0656 Hepe-Chr1:68736318 Hepe08g0630 Hepe-Chr8:5603072 9.63e-52 dispersed
Hepe01g0685 Hepe-Chr1:69160164 Hepe08g0630 Hepe-Chr8:5603072 3.01e-56 dispersed
Hepe02g2983 Hepe-Chr2:79051994 Hepe08g0630 Hepe-Chr8:5603072 5.72e-45 dispersed
Hepe02g3287 Hepe-Chr2:82479948 Hepe08g0630 Hepe-Chr8:5603072 2.64e-49 dispersed
Hepe06g1936 Hepe-Chr6:70591110 Hepe08g0630 Hepe-Chr8:5603072 2.16e-36 dispersed
Hepe07g1643 Hepe-Chr7:57647791 Hepe08g0630 Hepe-Chr8:5603072 3.52e-68 dispersed
Hepe08g0630 Hepe-Chr8:5603072 Hepe08g0703 Hepe-Chr8:6338705 2.39e-55 dispersed
Hepe08g0433 Hepe-Chr8:3815202 Hepe08g0630 Hepe-Chr8:5603072 8.56e-24 transposed
Hepe02g3147 Hepe-Chr2:80696914 Hepe08g0630 Hepe-Chr8:5603072 2.45e-28 wgd
Hepe02g0029 Hepe-Chr2:441251 Hepe08g0630 Hepe-Chr8:5603072 5.32e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56137 PF03195 LOB 7.30E-44 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0630 - - - 0.0