Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0633 ATGCATATGGAGAATTTATCATCTAGTGATCCATCGCATCAGTCAATGTACGAAAATAGTGATTCGAAGCACTCACAGGATGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATACTCACCTTCTAATCAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGTAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATTTTTTGCCATAGGTTCTTCCTTCGGCAGTCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCTCGCCCGTTGAAGGATGTTATTATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATAAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTCGCAACTCTTGCTTTTGATCTTAATGTGCACCATCCTTACAAACCCCTTGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTTGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTCGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAGATGTTGGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGTGAAGCTGATGGAAGCATTGGAGGTGGTCCCATTAATCAAACCCCAACAAAAGCTCCTACTAACAGCGAAGAACGTGCCGTAACGGACAATCATGCACTTGGTGCAGGTATTGCTACTTCAAGACTTGGAACCTCAAAAGCTGGTACATCTAGGCCAGCATCTGAACACTCGTTTGCAGGTGATCAGCCTTCGAGAGCAATGCCGAATCATAGTATTGAAAGTTCGAGTATAGATTTTAGAAGTCCTTCGAATCACAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCAGCTTTCCACGACAAGGGAAAGGCTCAAAACTCGTTAAAGCATCAGTCAGAGGGATTAGTTGAGCAAGACCATGGAAATGATATGAAAATAAATGAAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGAAAATCTCAGGACGTTATCAAAAAGATCGATAAGGACAAAGTAAAGGCCGCACTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGCTGGCAGTGAGAAAATCAAGCGAGAACAGAGGCAAACATGGAATATGCCATCGAATAAACAAGAACACGAGAATGATTTGTATCAAGACAAACATCGAGAGGACGATAGAGATGAGCATCCTCAAAGAACGCGACAATCGTCATATGATCTAGATTCTAGCAACATGGAAGAAGGGGAGTTCGGAAACGCTAATGAAGTTGGTTATGGGTATCAAGAGTCTCCAAAGTCAAACAACAGTCGTAAGAGAGGCAGAGAGCTCACAGGATAA 1734 42.21 MHMENLSSSDPSHQSMYENSDSKHSQDDGLEDGSRWYFSRKELEEYSPSNQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLAFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPINQTPTKAPTNSEERAVTDNHALGAGIATSRLGTSKAGTSRPASEHSFAGDQPSRAMPNHSIESSSIDFRSPSNHKTGSESKVRQEMEPSAFHDKGKAQNSLKHQSEGLVEQDHGNDMKINETRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMMDEDDLIERELEAGVEMAAGSEKIKREQRQTWNMPSNKQEHENDLYQDKHREDDRDEHPQRTRQSSYDLDSSNMEEGEFGNANEVGYGYQESPKSNNSRKRGRELTG 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5625639 5636912 - Hsped.08g06330.1 Hepe08g0633 576605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0633 577 MobiDBLite consensus disorder prediction 346 363 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 364 402 - -
Hepe08g0633 577 FunFam Cyclin-T1-5 like 178 282 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 481 499 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 274 304 - -
Hepe08g0633 577 Pfam Cyclin-T2-like, C-terminal domain 181 268 - -
Hepe08g0633 577 FunFam Cyclin-T1-5 like 25 176 - -
Hepe08g0633 577 Gene3D - 178 278 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 1 19 - -
Hepe08g0633 577 CDD CYCLIN_AcCycT_rpt2 179 271 - -
Hepe08g0633 577 Gene3D - 27 176 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 288 304 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 481 577 - -
Hepe08g0633 577 SMART cyclin_7 68 170 IPR013763 -
Hepe08g0633 577 SMART cyclin_7 183 268 IPR013763 -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 316 402 - -
Hepe08g0633 577 PIRSF Cyclin_L 34 479 - -
Hepe08g0633 577 PIRSF Cyclin_L 478 576 - -
Hepe08g0633 577 PANTHER CYCLIN 33 461 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(InterPro)|GO:0016538(PANTHER)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Hepe08g0633 577 MobiDBLite consensus disorder prediction 321 336 - -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 511 534 - -
Hepe08g0633 577 SUPERFAMILY Cyclin-like 33 178 IPR036915 -
Hepe08g0633 577 MobiDBLite consensus disorder prediction 1 32 - -
Hepe08g0633 577 Pfam Cyclin, N-terminal domain 40 177 IPR006671 -
Hepe08g0633 577 CDD CYCLIN_AcCycT_rpt1 52 175 - -
Hepe08g0633 577 SUPERFAMILY Cyclin-like 179 275 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0633 K15188 - - csv:101220862 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1646 Hepe-Chr7:57710129 Hepe08g0633 Hepe-Chr8:5625639 6.86e-23 dispersed
Hepe07g1647 Hepe-Chr7:57711397 Hepe08g0633 Hepe-Chr8:5625639 6.99e-151 dispersed
Hepe08g0633 Hepe-Chr8:5625639 Hepe10g0615 Hepe-Chr10:7650923 7.75e-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81