Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe08g0637 | ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTCGAGAGCAGTGATACTATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGACGAACACTTGCAGATTATAACATCCAAAAGGAGTCCACCCTTCACCTTGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTCAAGACTCTCACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACTATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTGATTTATGCCGGCAAACAACTTGGGGATGACAAAACGGCTAAAGATTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTGGCCCTGAGGGGTGGTGGTAACCTGTAA | 468 | 46.58 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGGNL | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5696928 | 5700716 | + | Hsped.08g06370.1 | Hepe08g0637 | 576609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe08g0637 | 155 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515(InterPro) | |
| Hepe08g0637 | 155 | Pfam | Ubiquitin family | 79 | 149 | IPR000626 | GO:0005515(InterPro) | |
| Hepe08g0637 | 155 | FunFam | NEDD8 protein | 77 | 154 | - | - | |
| Hepe08g0637 | 155 | Gene3D | - | 78 | 154 | - | - | |
| Hepe08g0637 | 155 | Gene3D | - | 1 | 77 | - | - | |
| Hepe08g0637 | 155 | SUPERFAMILY | Ubiquitin-like | 79 | 153 | IPR029071 | - | |
| Hepe08g0637 | 155 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Hepe08g0637 | 155 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515(InterPro) | |
| Hepe08g0637 | 155 | SMART | ubq_7 | 77 | 148 | IPR000626 | GO:0005515(InterPro) | |
| Hepe08g0637 | 155 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515(InterPro) | |
| Hepe08g0637 | 155 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Hepe08g0637 | 155 | ProSitePatterns | Ubiquitin domain signature. | 103 | 128 | IPR019954 | - | |
| Hepe08g0637 | 155 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Hepe08g0637 | 155 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Hepe08g0637 | 155 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Hepe08g0637 | 155 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Hepe08g0637 | 155 | PANTHER | UBIQUITIN | 1 | 76 | IPR050158 | GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER) | |
| Hepe08g0637 | 155 | CDD | Ubl_NEDD8 | 79 | 152 | IPR038738 | - | |
| Hepe08g0637 | 155 | FunFam | Polyubiquitin 3 | 1 | 76 | - | - | |
| Hepe08g0637 | 155 | ProSiteProfiles | Ubiquitin domain profile. | 77 | 152 | IPR000626 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe04g1786 | Hepe-Chr4:72764519 | Hepe08g0637 | Hepe-Chr8:5696928 | 1.36e-79 | dispersed | |
| Hepe07g1168 | Hepe-Chr7:26828457 | Hepe08g0637 | Hepe-Chr8:5696928 | 3.08e-65 | dispersed | |
| Hepe07g1259 | Hepe-Chr7:36750173 | Hepe08g0637 | Hepe-Chr8:5696928 | 7.16e-15 | dispersed | |
| Hepe08g0637 | Hepe-Chr8:5696928 | Hepe10g0025 | Hepe-Chr10:234446 | 4.12e-47 | dispersed | |
| Hepe08g0637 | Hepe-Chr8:5696928 | Hepe07g1268 | Hepe-Chr7:37054331 | 4.18e-82 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe08g0637 | K12158 | - | vvi:100241051 | 291.197 |