Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0647 ATGGCTTTCTCATCTTCCTTTGCTGGATCTGCCGTTTCTTCTTCTCTGATCGAAGCTTCTCGTTCTGAATTCTTGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAACTCTTCAAAGCTTCAATCTGGCATTTTTGGAACTACTGTTTCCGGTGGAGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGCACTATCCAACCGATCAAAGCTACGGCCACCGAGGCACCTCCGACGATCCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGTTTTGGTCGGATTGGAAGACTGGTATTACGAATTGCAACCTCCAGGGATGATATTGATGTTGTAGCAGTTAACGATCCATTTGTTGACGCTAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGCAATTTCAATGGAACTATCAAGGTTCTCAGTGATTCAGCCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCCGCAGATATCCCTTGGGGTGATTATGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTACAAGAGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCCCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTCTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTCGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGGTCTTTCATTCTCTCATTCTCTCTCAAACTCCCAACTTATTTCATGTGTGCCAATTGTATTCTTTCATTTTTTTTCAGCAACACAAAAGACCGTGGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGCGGTGCTGCACAAAATATAATTCCTAGCTCCACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCATTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCATATGAAGATGTAAAGGCAGCAGTAAAGTATGCGTCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGACGAGGATGTCGTCTCTACTGATTTTCTTGGCGACTCAAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCGTGAAGCTCGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATCGAGCACATGTCATTGGTTTCGGCCTTGAACTAA 1356 44.32 MAFSSSFAGSAVSSSLIEASRSEFLPSDCRKASCVGNSSKLQSGIFGTTVSGGASSLQLRSSKVRTIQPIKATATEAPPTIQKTPSSGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGNFNGTIKVLSDSALEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTREKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTGLSFSHSLSNSQLISCVPIVFFHFFSATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSNRVLDLIEHMSLVSALN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5772166 5776538 + Hsped.08g06470.1 Hepe08g0647 576619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0647 451 Gene3D - 85 258 - -
Hepe08g0647 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 277 429 - -
Hepe08g0647 451 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Hepe08g0647 451 Gene3D Dihydrodipicolinate Reductase; domain 2 275 429 - -
Hepe08g0647 451 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 260 IPR036291 -
Hepe08g0647 451 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 239 428 - -
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 270 IPR020829 GO:0016620(InterPro)
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 283 427 IPR020829 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Hepe08g0647 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 249 - -
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 191 IPR020828 GO:0051287(InterPro)
Hepe08g0647 451 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 85 445 IPR020831 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1624 Hepe-Chr2:21708330 Hepe08g0647 Hepe-Chr8:5772166 6.81e-99 dispersed
Hepe07g2147 Hepe-Chr7:65755180 Hepe08g0647 Hepe-Chr8:5772166 4.21e-158 dispersed
Hepe07g2148 Hepe-Chr7:65760514 Hepe08g0647 Hepe-Chr8:5772166 1.17e-166 dispersed
Hepe02g0014 Hepe-Chr2:289718 Hepe08g0647 Hepe-Chr8:5772166 1.04e-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0647 K00134 - csv:101203472 770.0