Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0647 ATGGCTTTCTCATCTTCCTTTGCTGGATCTGCCGTTTCTTCTTCTCTGATCGAAGCTTCTCGTTCTGAATTCTTGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAACTCTTCAAAGCTTCAATCTGGCATTTTTGGAACTACTGTTTCCGGTGGAGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGCACTATCCAACCGATCAAAGCTACGGCCACCGAGGCACCTCCGACGATCCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGTTTTGGTCGGATTGGAAGACTGGTATTACGAATTGCAACCTCCAGGGATGATATTGATGTTGTAGCAGTTAACGATCCATTTGTTGACGCTAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGCAATTTCAATGGAACTATCAAGGTTCTCAGTGATTCAGCCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCCGCAGATATCCCTTGGGGTGATTATGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTACAAGAGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCCCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTCTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTCGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGGTCTTTCATTCTCTCATTCTCTCTCAAACTCCCAACTTATTTCATGTGTGCCAATTGTATTCTTTCATTTTTTTTCAGCAACACAAAAGACCGTGGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGCGGTGCTGCACAAAATATAATTCCTAGCTCCACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCATTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCATATGAAGATGTAAAGGCAGCAGTAAAGTATGCGTCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGACGAGGATGTCGTCTCTACTGATTTTCTTGGCGACTCAAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCGTGAAGCTCGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATCGAGCACATGTCATTGGTTTCGGCCTTGAACTAA 1356 44.32 MAFSSSFAGSAVSSSLIEASRSEFLPSDCRKASCVGNSSKLQSGIFGTTVSGGASSLQLRSSKVRTIQPIKATATEAPPTIQKTPSSGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGNFNGTIKVLSDSALEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTREKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTGLSFSHSLSNSQLISCVPIVFFHFFSATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSNRVLDLIEHMSLVSALN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5772166 5776538 + Hsped.08g06470.1 Hepe08g0647 576619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0647 451 Gene3D - 85 258 - -
Hepe08g0647 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 277 429 - -
Hepe08g0647 451 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Hepe08g0647 451 Gene3D Dihydrodipicolinate Reductase; domain 2 275 429 - -
Hepe08g0647 451 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 260 IPR036291 -
Hepe08g0647 451 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 239 428 - -
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 270 IPR020829 GO:0016620(InterPro)
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 283 427 IPR020829 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Hepe08g0647 451 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Hepe08g0647 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 249 - -
Hepe08g0647 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 191 IPR020828 GO:0051287(InterPro)
Hepe08g0647 451 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 85 445 IPR020831 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0647 K00134 - - csv:101203472 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1624 Hepe-Chr2:21708330 Hepe08g0647 Hepe-Chr8:5772166 6.81e-99 dispersed
Hepe07g2147 Hepe-Chr7:65755180 Hepe08g0647 Hepe-Chr8:5772166 4.21e-158 dispersed
Hepe07g2148 Hepe-Chr7:65760514 Hepe08g0647 Hepe-Chr8:5772166 1.17e-166 dispersed
Hepe02g0014 Hepe-Chr2:289718 Hepe08g0647 Hepe-Chr8:5772166 1.04e-240 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61