Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0652 ATGGCGGTCGCTGCAAGAGCATTTCGATCAGTGGTGCGATCGAGCAGGCTCCCTCTTCTATCTCCATCTTCTTATGTGTTTGCTGCGCAGAAATCTCACTCTCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCTCAGAGTATCGCCGCTCGTCTTCAGAGTTCTGGATTGCTACGAAGCCAAGGCCTCATTGGCGGGAAGTGGATTGATGCTTATGATGGGAAGACCATGAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGAAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAAGCGCTTACGTAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTTATAACCTTAGAGCAAGGCAAACCCTTAACAGAAGCTGTGGGCGAGACTAACTATGGAGCCAGCTTCATCGAATACTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTGAATGTTGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCCCAGGTAAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAATTGATGGCAGGAGCTGCTGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGCAATGCACCTTGCATAATCTTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCAAAGGCTTTCTCAAAAGCAGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTTTGAACGTCTCCATGATATAA 1158 45.77 MAVAARAFRSVVRSSRLPLLSPSSYVFAAQKSHSHTLLIRQMSSEAQSIAARLQSSGLLRSQGLIGGKWIDAYDGKTMKVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSKRLRKWYELLIAHKEEIGQLITLEQGKPLTEAVGETNYGASFIEYFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSKAFSKAVQNLQVGDGFGEGVAQGLNVSMI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5803528 5811369 + Hsped.08g06520.1 Hepe08g0652 576624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0652 385 SUPERFAMILY ALDH-like 43 380 IPR016161 GO:0016491(InterPro)
Hepe08g0652 385 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 380 IPR016163 GO:0016620(InterPro)
Hepe08g0652 385 Pfam Aldehyde dehydrogenase family 69 379 IPR015590 GO:0016491(InterPro)
Hepe08g0652 385 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 53 379 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Hepe08g0652 385 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491(InterPro)
Hepe08g0652 385 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491(InterPro)
Hepe08g0652 385 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 307 IPR016162 GO:0016491(InterPro)
Hepe08g0652 385 FunFam Succinate-semialdehyde dehydrogenase I 75 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0652 K17761 - - csv:101217352 629.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0652 Hepe-Chr8:5803528 Hepe09g0747 Hepe-Chr9:7167395 8.06e-71 dispersed
Hepe08g0652 Hepe-Chr8:5803528 Hepe08g0653 Hepe-Chr8:5813364 9.24e-264 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0747 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.8 2.3e-214 741.9
Hepe10g0002 . 31 560 Aldehyde Dehydrogenase Gene Family AT3G24503 51.8 8.1e-159 557.4
Hepe09g0192 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.9e-156 548.1
Hepe09g0192 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 79.7 8.2e-258 886.3
Hepe10g0002 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 71.9 3.1e-241 831.2
Hepe09g0747 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.1e-164 575.5
Hepe10g0002 . 1 404 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 1.6e-165 579.3
Hepe09g0192 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 1.0e-164 576.6
Hepe09g0747 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.6e-104 375.6
Hepe01g2295 . 2 415 Aldehyde Dehydrogenase Gene Family AT4G34240 65.9 1.1e-161 567.0
Hepe07g0686 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G34240 50.1 1.4e-132 470.3
Hepe01g2295 . 3 413 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 6.3e-181 630.6
Hepe07g0686 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe08g0118 . 66 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe07g0686 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 3.0e-187 651.7
Hepe08g0118 . 4 484 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 2.5e-157 552.4
Hepe08g0653 . 32 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 2.5e-235 811.6
Hepe08g0652 . 32 379 Aldehyde Dehydrogenase Gene Family AT1G79440 75.9 6.8e-156 547.7
Hepe02g0702 . 5 489 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 1.1e-236 816.2
Hepe04g1389 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.5 1.5e-183 639.8
Hepe09g0167 . 8 397 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 6.7e-198 687.2
Hepe09g0167 . 8 399 Aldehyde Dehydrogenase Gene Family AT3G48170 83.9 2.8e-204 708.4
Hepe08g2460 . 1 493 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 7.1e-264 906.4
Hepe07g2286 . 21 462 Aldehyde Dehydrogenase Gene Family AT5G62530 81.3 5.2e-223 770.8
Hepe03g0048 . 39 595 Aldehyde Dehydrogenase Gene Family AT3G66658 75.5 3.3e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42