Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0653 ATGGCGGTCGCTGCAAGAGCATTTCGATCAGTGGTGCGATCGAGCAGGCTCCCTCTTCTATCTCCATCTTCTTATGTGTTTGCTGCGCAGAAATCTCACTCTCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCTCAGAGTATCGCCGCTCGTCTTCAGAGTTCTGGATTGCTACGAAGCCAAGGCCTCATTGGCGGGAAGTGGATTGATGCTTATGATGGGAAGACCATGAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGAAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAAGCGCTTACGTAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTTATAACCTTAGAGCAAGGCAAACCCTTAACAGAAGCTGTGGGCGAGACTAACTATGGAGCCAGCTTCATCGAATACTTTTCTGAGGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTGAATGTTGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCCCAGGTAAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAATTGATGGCAGGAGCTGCTGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGCAATGCACCTTGCATAATCTTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCGAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCAAAGGCTTTCTCAAAAGCAGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCATCACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAACCTACAGTTATTACTGACGTGAAGAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGAATGGTTGGAATTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAAGGGTCGAAATATGGGCTCGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCAACTGA 1611 45.25 MAVAARAFRSVVRSSRLPLLSPSSYVFAAQKSHSHTLLIRQMSSEAQSIAARLQSSGLLRSQGLIGGKWIDAYDGKTMKVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSKRLRKWYELLIAHKEEIGQLITLEQGKPLTEAVGETNYGASFIEYFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSKAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDAITKGAKVLLGGKRHSLGMTFFEPTVITDVKSDMLLSREEVFGPVAPLLPFKTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGINEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMDRN 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5813364 5822057 + Hsped.08g06530.1 Hepe08g0653 576625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0653 536 CDD ALDH_F5_SSADH_GabD 80 530 - -
Hepe08g0653 536 FunFam Succinate-semialdehyde dehydrogenase I 75 316 - -
Hepe08g0653 536 Pfam Aldehyde dehydrogenase family 69 528 IPR015590 GO:0016491(InterPro)
Hepe08g0653 536 FunFam Aldehyde dehydrogenase, putative 500 526 - -
Hepe08g0653 536 NCBIfam succinate-semialdehyde dehydrogenase 80 526 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Hepe08g0653 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491(InterPro)
Hepe08g0653 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 497 IPR016163 GO:0016620(InterPro)
Hepe08g0653 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 522 IPR016162 GO:0016491(InterPro)
Hepe08g0653 536 SUPERFAMILY ALDH-like 58 534 IPR016161 GO:0016491(InterPro)
Hepe08g0653 536 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 53 533 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Hepe08g0653 536 FunFam Succinate-semialdehyde dehydrogenase I 308 497 - -
Hepe08g0653 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0653 K17761 - - csv:101217352 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1419 Hepe-Chr3:70918281 Hepe08g0653 Hepe-Chr8:5813364 7.48e-59 dispersed
Hepe08g0118 Hepe-Chr8:997473 Hepe08g0653 Hepe-Chr8:5813364 1.02e-36 dispersed
Hepe08g0653 Hepe-Chr8:5813364 Hepe09g0192 Hepe-Chr9:1523972 2.94e-108 dispersed
Hepe08g0652 Hepe-Chr8:5803528 Hepe08g0653 Hepe-Chr8:5813364 9.24e-264 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0747 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.8 2.3e-214 741.9
Hepe10g0002 . 31 560 Aldehyde Dehydrogenase Gene Family AT3G24503 51.8 8.1e-159 557.4
Hepe09g0192 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.9e-156 548.1
Hepe09g0192 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 79.7 8.2e-258 886.3
Hepe10g0002 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 71.9 3.1e-241 831.2
Hepe09g0747 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.1e-164 575.5
Hepe10g0002 . 1 404 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 1.6e-165 579.3
Hepe09g0192 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 1.0e-164 576.6
Hepe09g0747 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.6e-104 375.6
Hepe01g2295 . 2 415 Aldehyde Dehydrogenase Gene Family AT4G34240 65.9 1.1e-161 567.0
Hepe07g0686 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G34240 50.1 1.4e-132 470.3
Hepe01g2295 . 3 413 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 6.3e-181 630.6
Hepe07g0686 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe08g0118 . 66 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe07g0686 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 3.0e-187 651.7
Hepe08g0118 . 4 484 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 2.5e-157 552.4
Hepe08g0653 . 32 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 2.5e-235 811.6
Hepe08g0652 . 32 379 Aldehyde Dehydrogenase Gene Family AT1G79440 75.9 6.8e-156 547.7
Hepe02g0702 . 5 489 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 1.1e-236 816.2
Hepe04g1389 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.5 1.5e-183 639.8
Hepe09g0167 . 8 397 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 6.7e-198 687.2
Hepe09g0167 . 8 399 Aldehyde Dehydrogenase Gene Family AT3G48170 83.9 2.8e-204 708.4
Hepe08g2460 . 1 493 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 7.1e-264 906.4
Hepe07g2286 . 21 462 Aldehyde Dehydrogenase Gene Family AT5G62530 81.3 5.2e-223 770.8
Hepe03g0048 . 39 595 Aldehyde Dehydrogenase Gene Family AT3G66658 75.5 3.3e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42