Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0654 ATGTTCCATGCTGCCAAGAAACCCTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCCGATAAGGCCACTCCCAAGACCATCATGAGGGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTCGGAAAACAACCGCACAAGGAATTCAATGATCAATCAATAAAAGATAGTATGAGAGCTTCAGCCTTAGAACTTCAGAGAAATAGTGGATCTTCTTCTGGTTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCGGCAGCCGCCGGACCTTTCAAAACCACTTCCAACAATATAGGAACAACCACCAATCTTGTTTCAGACGCCGCCATCAAAGACTTCATTTCACCTCCTCCACCACACACCTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCCGAACCGCCGCCGCCTCCGCCGCCTCTCATCGACTGCCTCAAGAAGCCTAGCCCCTTCATCTCTGGCACCGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAGGACTTGGGAACCCCTCAGGCTACCCTAGCGCCACCGCCACCGTCCATAGGCGGCCCGACTGACTTGGACTCTCTCCAGCTGGAAATGTATGAATCTAAGCCACCGCCACCGTCATCCCTGCTCGCCATTGGCAACGACACGATGAATGAGAAGAAGTTCGACATGTCGTTAAAGCTTGAGAGACCGTCACCGCGGCAATCGTCCGGACATTCCGACGAAAGGGCGAATAATGGTATGCCTAACAATAACAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1086 52.3 MFHAAKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDSMRASALELQRNSGSSSGLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAGPFKTTSNNIGTTTNLVSDAAIKDFISPPPPHTFPPFQDINNLFTSEPPPPPPPLIDCLKKPSPFISGTGKTPIFWPDDLRLQDLGTPQATLAPPPPSIGGPTDLDSLQLEMYESKPPPPSSLLAIGNDTMNEKKFDMSLKLERPSPRQSSGHSDERANNGMPNNNNPTMSQPQGRNSSFG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5829050 5832498 + Hsped.08g06540.1 Hepe08g0654 576626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0654 361 Gene3D - 32 90 - -
Hepe08g0654 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Hepe08g0654 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Hepe08g0654 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 185 IPR046955 GO:0003700(InterPro)
Hepe08g0654 361 FunFam Myb family transcription factor 32 90 - -
Hepe08g0654 361 MobiDBLite consensus disorder prediction 290 361 - -
Hepe08g0654 361 MobiDBLite consensus disorder prediction 266 285 - -
Hepe08g0654 361 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Hepe08g0654 361 MobiDBLite consensus disorder prediction 1 25 - -
Hepe08g0654 361 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Hepe08g0654 361 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Hepe08g0654 361 MobiDBLite consensus disorder prediction 324 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1901 Hepe-Chr6:70191849 Hepe08g0654 Hepe-Chr8:5829050 2.66e-21 dispersed
Hepe08g0654 Hepe-Chr8:5829050 Hepe08g1728 Hepe-Chr8:32126347 1.79e-32 dispersed
Hepe05g1761 Hepe-Chr5:67921590 Hepe08g0654 Hepe-Chr8:5829050 3.29e-46 transposed
Hepe06g1815 Hepe-Chr6:69246317 Hepe08g0654 Hepe-Chr8:5829050 5.58e-36 transposed
Hepe02g0007 Hepe-Chr2:242462 Hepe08g0654 Hepe-Chr8:5829050 5.40e-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56140 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0654 - - - 0.0