Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0658 ATGGCCCATTTAAGGGACCGACCCTGGCTGAGCGATATGGGAAGCTGGGTCAGCTCGTCTGTTAAAAGGATTACTGACGGCGGCAAAACGGGTGGCAAAACGGCTGCCGTCGGGACAAAACCGTCGCATAAGACGACTGAGCGCAGTAGAATCGGCGGCGGCGGCAGCAGCCGTGGAAAGGCGTCGTGGCGGCCCGATAAAAAGGCTTCTTTCCGGACGAAATATCGTTTCATCGCAGATAACTTCTCCTCTATTGATCAGGTTACTGCAGCCTTGCGAAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTAAAGTATCGTTCAATAATCAGAGTTTGCATTCGGTTTCCAATTCTCCGAATCCCTACGAGAAGGCTTTGTCGATCATCGGGAAAACTCTGGCTCCCTTCGACGATGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGCGACGACACACGATCAAGAGGTCTTCAGTTTTCACACTGATAATTCCCCGTGCCATGGGTTTGAAGAAGTTTTGGACTGCTACAAAAAGATAATTCCGAACGTGCAACTTTCAGGGCCAACTTCTTACGGTCCCGTGGTTGAAGCTGCAATGGACATTGTGGAGAAGAGTGGTGGCCAATTTCATATTCTGCTCATTATTGCAGACGGACAGGTTACTCGAAGCTCGAGTGTTGGCGATGGTGACTTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGAATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGGCCTTGGGACGACATGAAGAAGTTCGACGACATGATTCCAGCACGGGATTTCGATAATTTTCAGTTTGTTAACTTCACCGAGATAATGTCCAAAAACATTGGCACACCTGAAAAAGAAGCAGCAGCTTTTGCTCTAGCTGCACTTATGGAGGTTCCTTTCCAATACAAAGCAGTCACAGAAATGGGTCTTATGCGACATGTGACAGGAAAAGCAAAAAGAATTATTCCACGACCCCCACCAGTGCGTTATACTCGTCCTACACAGCTTACTCCCGAACCCAGCAACACCTTCTTGGCTTCTCGTCCTGCACGACTTACTCCCGAACCCAACAACACCACCTCGGCTTCTGCATCTGATGATCGAAGCCAGGTCTGCCCCATTTGCTTGACCGAGGCAAAGGACTTGGCGTTTGGATGCGGCCACATGGCCTGTAGGGAGTGTGGATCAAAATTATCCAATTGCCATATATGTCGCCAGCCTATCAGAGACCGCATAAGGCTATATACGGGGTGA 1335 48.69 MAHLRDRPWLSDMGSWVSSSVKRITDGGKTGGKTAAVGTKPSHKTTERSRIGGGGSSRGKASWRPDKKASFRTKYRFIADNFSSIDQVTAALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNQSLHSVSNSPNPYEKALSIIGKTLAPFDDDGLIPCFGFGDATTHDQEVFSFHTDNSPCHGFEEVLDCYKKIIPNVQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIIADGQVTRSSSVGDGDLSVQEEKTIKAIVDASEYPLSIILVGVGDGPWDDMKKFDDMIPARDFDNFQFVNFTEIMSKNIGTPEKEAAAFALAALMEVPFQYKAVTEMGLMRHVTGKAKRIIPRPPPVRYTRPTQLTPEPSNTFLASRPARLTPEPNNTTSASASDDRSQVCPICLTEAKDLAFGCGHMACRECGSKLSNCHICRQPIRDRIRLYTG 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5869266 5879953 - Hsped.08g06580.1 Hepe08g0658 576630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0658 444 SUPERFAMILY vWA-like 101 283 IPR036465 -
Hepe08g0658 444 SMART VWA_4 99 302 IPR002035 -
Hepe08g0658 444 MobiDBLite consensus disorder prediction 361 393 - -
Hepe08g0658 444 MobiDBLite consensus disorder prediction 22 65 - -
Hepe08g0658 444 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
Hepe08g0658 444 MobiDBLite consensus disorder prediction 349 393 - -
Hepe08g0658 444 PANTHER COPINE FAMILY PROTEIN 1 61 442 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Hepe08g0658 444 Pfam Copine 124 339 IPR010734 -
Hepe08g0658 444 Pfam Zinc finger, C3HC4 type (RING finger) 396 437 - -
Hepe08g0658 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 444 IPR013083 -
Hepe08g0658 444 SUPERFAMILY RING/U-box 394 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1690 Hepe-Chr4:72064537 Hepe08g0658 Hepe-Chr8:5869266 6.83e-100 dispersed
Hepe08g0658 Hepe-Chr8:5869266 Hepe02g1760 Hepe-Chr2:25086893 7.96e-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0658 K16280 - csv:101218058 649.818