Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0662 ATGTCGCCCATTTCCCATTTTTTAATCTTTTTCTTCTTCTTCTTCTTCCTCTTCTTTCTCTCTGTTCCCGTCGCATTCGGCGACAATGACGACACTCAACAATTAGAGTCTGTGAAGCTCGATCTGTTGCATCGCCACCATCCAAAAGTCGCCGAGCAGCTTCACGGCGATATGAAGTCGGCTGTTCAAGGAATAAACGATCGCTTGAAGGATATTCACGATCACGACAACAAGCGCCACCGTTCGATCTCGGCGTCGCTGAATAGGAAAGAAATTGAGGAGAAAACCGCGGCGGAGAAGGAGGTAGAGGAGAAGGAGAAAGAAGCAGAGGCAGCGGCGAGGAAGGAGATGGAGGATTCCGGTTATCCATTTCCTCCGACGTCGCCGACGCCGATAGGGATGAAAATGATATCGGGAGCCGATTTCGGAAGTAGTGAGTATTTTGTGCAATTGAAAGTGGGAACGCCGCCGCAGACGTTCATGTTGATTGCCGATACTGGTAGTGACCTAACGTGGATTAAATGTAGATATCGGCGGTGTGTCGGAAACTGCAGCACCAACGCCATTCATCGAAACCGTAACAGACGGAAAATAGGATTCAAAAGGGCGTTTTTGGCGAATCGATCTACTTCTTTCAAGACGGTTGATTGCAACTCCGATGAGTGTAAAAGACAGTTTTCCGATCTCTTTTCCACAAGTACATGCGAATCCGCTAACAGCCCTTGTCGCTATGATTATAGTTACTCAGGTGGAGCAAGTGCAAAGGGAATATTTGCAAGGGAGACCATAACGGTATGTTTGACAAACGGTAAAGAAAAACAACTGACTGACTCAATAATAGGCTGCACAGAATCAGCTCTGGGGAAAATCTTCGGCGGAGCCGACGGCGTGATTGGCTTAGGCTCGAGCCCCTACTCCTTCCCTTTCAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCGCCTACTGCCTCGTCGACCACCTCAGCGACCAAACCGCCACCAGCTACTTCATCCTCGGCGGCGCAAACGCCCAATCCTCCTCTGCAACCTCCTCCGTAACGCCCTCCGGCAACATGTCATACACAAGGCTCTTCATCGGAGAGGCCTTCAGCAGCTTCTACGGCGTCGTCCTCAACGGAATCTCCGCGGACGGCGTGATGCTCAACATCCCACCACGCGTTTGGGATATCAACGCCGGCGGAGGGACGATCATCGACTCCGGCACCAGCCTGACGATGCTGGCGGCGCCGGCGTTCGAAATGGTGTTGGAAGCCGTGATTCCGAAGCTGAAGAACTTCGAGAGAATTTTAATGGAACCATTCGAATATTGCTTCAACAGCAGCCAATACACCGACGATATGGCCCCACGGCTGCGATTCCATTTCTTCGACGGCGCTGTGTTCGAGCCGCCGACGAAAAGCTACATTATTTCGGTCGGTGATAATCTTAACTGTGTTGGGTTCGTTTCTATGGCTTTTCCGGCCACCAGTATCATTGGGAATATCCTCCAGCAAAACCACCTTTGGCAATATGATTTCAATGTTCAAAAGATCGGTTTTGCTCCTTCTCAATGCGTCTAG 1581 50.79 MSPISHFLIFFFFFFFLFFLSVPVAFGDNDDTQQLESVKLDLLHRHHPKVAEQLHGDMKSAVQGINDRLKDIHDHDNKRHRSISASLNRKEIEEKTAAEKEVEEKEKEAEAAARKEMEDSGYPFPPTSPTPIGMKMISGADFGSSEYFVQLKVGTPPQTFMLIADTGSDLTWIKCRYRRCVGNCSTNAIHRNRNRRKIGFKRAFLANRSTSFKTVDCNSDECKRQFSDLFSTSTCESANSPCRYDYSYSGGASAKGIFARETITVCLTNGKEKQLTDSIIGCTESALGKIFGGADGVIGLGSSPYSFPFKAAENANGGGFAYCLVDHLSDQTATSYFILGGANAQSSSATSSVTPSGNMSYTRLFIGEAFSSFYGVVLNGISADGVMLNIPPRVWDINAGGGTIIDSGTSLTMLAAPAFEMVLEAVIPKLKNFERILMEPFEYCFNSSQYTDDMAPRLRFHFFDGAVFEPPTKSYIISVGDNLNCVGFVSMAFPATSIIGNILQQNHLWQYDFNVQKIGFAPSQCV 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5934431 5936186 - Hsped.08g06620.1 Hepe08g0662 576634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0662 526 Coils Coil 88 119 - -
Hepe08g0662 526 Pfam Xylanase inhibitor C-terminal 374 521 IPR032799 -
Hepe08g0662 526 Gene3D Acid Proteases 344 526 IPR021109 -
Hepe08g0662 526 PANTHER OS07G0603500 PROTEIN-RELATED 20 522 IPR051708 -
Hepe08g0662 526 Pfam Xylanase inhibitor N-terminal 147 341 IPR032861 -
Hepe08g0662 526 SUPERFAMILY Acid proteases 139 525 IPR021109 -
Hepe08g0662 526 CDD pepsin_A_like_plant 146 525 IPR034161 -
Hepe08g0662 526 PRINTS Pepsin (A1) aspartic protease family signature 403 414 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe08g0662 526 PRINTS Pepsin (A1) aspartic protease family signature 497 512 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe08g0662 526 PRINTS Pepsin (A1) aspartic protease family signature 153 173 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe08g0662 526 ProSiteProfiles Peptidase family A1 domain profile. 147 521 IPR033121 -
Hepe08g0662 526 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 162 173 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe08g0662 526 MobiDBLite consensus disorder prediction 70 129 - -
Hepe08g0662 526 Gene3D Acid Proteases 129 340 IPR021109 -
Hepe08g0662 526 MobiDBLite consensus disorder prediction 70 117 - -
Hepe08g0662 526 FunFam Aspartyl protease family protein 356 526 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2198 Hepe-Chr2:61427566 Hepe08g0662 Hepe-Chr8:5934431 2.71e-65 dispersed
Hepe08g0662 Hepe-Chr8:5934431 Hepe08g1169 Hepe-Chr8:11964144 2.66e-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34