Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0683 ATGTTGAAGAATACTCGAGCTGGGAATTCTAGCAGCAACCTCCATGATTGCAAATCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCCTGGAGTCAGGTGAAACTCAACGAAGTCCTCCGATCGCCCGAGGATTTGCAGCGGTTGTATTCGGAGGTTCACTTACTTAGCACACTTAAGCATGATTCAATCATGCAATTCTACACCTCTTGGATCGACGTCGATCGCAAAACCTTCAACTTCATTACCGAACTGTTTACTTCGGGAACACTCAGAGAATATGGGAAGAAATATAGGCAGGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATCCTGCAGGGGCTCGTTTATTTGCATGAACACGATCCTCCGATAATACACCGAGATTTGAAGTGTGATAATATCTTTGTAAATGGCCATCTTGGGCAAGTCAAGATTGGTGATTTGGGGCTTGCAGCTATACTCCATGGTTCCAAATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAATTATACGAGGAGGATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTATGGAGATGCTTACTTCTGAGTATCCGTATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCAAGACATGGAAGCGCAGAGATTTGTTAAGAAATGCTTGGTTCCGGTTTCGATGAGGGCGTCTGCAAAGGAACTCTTGGTTGATTCTTTTCTCATGGTTGATGGCGATAGACCTTTGTTGAGGGAGAGGAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTAGGTGAAGGTTTAAGCAGGACGAACATGACAATCACGGGGAAGCTGAACCCCGAAGACAATACCCTCTTTCTCCGAGTTCAGACTGCAGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTGAACGACACAGCATTAGATGTGGCGATGGAGATGGTGAAAGAGTTGGAAATCTCTGATTGGGAGCCTTTCGAAATAGCGGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCAAACTGGAATAGGAGTGATTTATCCAACCATAGCCTCAGCTTCAGCTATGCAGAAGAAGATGATGATGCACCTCATCATACTTTTCGCTCCGTCTCCTCGTCATCCCAAGCAACAACTTTCGGGCTCGTCACCTCCCCAAGAACAAATCAAAACATATCAGATGGTTTTAGTTGGTTCCCAGATGATGTGCTTGACGATAGCAGTTCACAATGCTCGTCGGCATCGGGAAAATACTCCAACTTGAATTACATCAGCAGCGACGAGTACGAGACCAATATGAGTTCGGTCCGAATAGATCAACATAACAACATCAATAAGATTCACAACTCCTCGAGATTTTGTCCCATTGAGAATCGCAACAACAAGGATTTCTTGGCTGGACTTTTATACAAGCAGAGCCAATGTGCGGTAGGGTCATCTCAAGGAGCTGCTTCTGGTCGCAAAGACAAGAGGGCAACGGATGGCCGTAGTTTAACAAGAAACAGATCACTCGTTGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTCGAGGAAGTGAATAGAAGACGGTTATTCAAGACGGTTGGAGCGGTCGAAAGCATCGGTTTTCAAGCACCTTGTGAGGTTTCTACCAGCAAAAGGGTCTCGAGTAGGCAATCGATCGGGAACCGAAGTAGCGATGTAGGGAGAACGAGGAGAAATGACGATGTTAGGCAAGATGTTGGAAGGAGAACATGA 1932 45.81 MLKNTRAGNSSSNLHDCKSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHDSIMQFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRQVDIRAIKSWARQILQGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSKSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVMEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDMEAQRFVKKCLVPVSMRASAKELLVDSFLMVDGDRPLLRERNQNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDNTLFLRVQTADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSDLSNHSLSFSYAEEDDDAPHHTFRSVSSSSQATTFGLVTSPRTNQNISDGFSWFPDDVLDDSSSQCSSASGKYSNLNYISSDEYETNMSSVRIDQHNNINKIHNSSRFCPIENRNNKDFLAGLLYKQSQCAVGSSQGAASGRKDKRATDGRSLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSTSKRVSSRQSIGNRSSDVGRTRRNDDVRQDVGRRT 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6155648 6159752 + Hsped.08g06830.1 Hepe08g0683 576655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0683 643 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Hepe08g0683 643 Gene3D Transferase(Phosphotransferase) domain 1 116 294 - -
Hepe08g0683 643 MobiDBLite consensus disorder prediction 610 643 - -
Hepe08g0683 643 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Hepe08g0683 643 MobiDBLite consensus disorder prediction 610 625 - -
Hepe08g0683 643 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Hepe08g0683 643 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Hepe08g0683 643 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0683 643 CDD STKc_WNK 31 291 - -
Hepe08g0683 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0683 643 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0683 643 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0683 643 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 599 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Hepe08g0683 643 MobiDBLite consensus disorder prediction 626 643 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0683 Hepe-Chr8:6155648 Hepe09g1530 Hepe-Chr9:40128449 2.54e-154 dispersed
Hepe08g0683 Hepe-Chr8:6155648 Hepe04g0687 Hepe-Chr4:60420509 3.88e-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73036 PF00069 Pkinase 3.10E-46 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0683 K08867 - csv:101203757 1173.69