Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0685 | ATGGATAATAAGTCGAGTGTGGTGGTTCAAAGATATGAATTCGGGAGATTACTTGGCCAAGGAACCTTTGCAAAGGTATATTATGCGAGGAATACAGGAACTAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCATATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTACATTTATTTGAGGTTATGGCCACCAAGACTAAGATCTACTTCGTCTTGGAATATGCTAAAGGCGGTGAACTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAGGATCTTGCTTGGAAATACTTTTATCAGTTAATCAATGCGGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTCTAGCCGAGTCCAAGCGTCAAGACGGGTTGCTTCACACTACTTGTGGTACACCAGCTTATGTTGCCCCGGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCAAATTTGATGGAGATGTATAGGAAGATTGGACGAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGAATTCCGGAGGCTGCTAAGCAGGATGCTTGATCCAAACCCCATGACTAGAACATCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCTAAGATGTTAAGAAGTGAAATAGAGAGTGATTCTATAGCGACTGAAGATACAGCAGCTGTTTCGGGACCATCTGAGAGTAGTATGCCAGTAGATGAAAATCAAGAGCCGGATAGACCTCCGTCTTTGAATGCTTTTGATATCATCTCCCTTTCTGCAGGGTTCGATCTATCTAGGTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCAAAGCTAGAAGAAATTGCTAAACTTTTTCGGTTTCGAGTGCAGAAGAAGGAAGCAGGCCTACTAAAGTTTGAGGCACTAACAGAGGGAAAAAAGGGGGCATTGTCCATTGATACAGAGATCTTCGAGGTTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCTAATGGGGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGTGAGCAAGAGCAAGAGCAACAACAACAACCTCAGCCTCCACCTCTCCAACCCCAGGATCCAGATCCGGATCCGGATCCGGATCAAGTGGGTGCGTCACAACAGCAGTAG | 1419 | 42.07 | MDNKSSVVVQRYEFGRLLGQGTFAKVYYARNTGTNQSVAIKVIDKEKITKASLIDHIKREISIMRLVRHPNIVHLFEVMATKTKIYFVLEYAKGGELFDKVAKGRLREDLAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRADYKCPSWFPREFRRLLSRMLDPNPMTRTSIAMIRQSSWFKKGLRSKMLRSEIESDSIATEDTAAVSGPSESSMPVDENQEPDRPPSLNAFDIISLSAGFDLSRLFEDNSKKKETLFTCRKPASVILSKLEEIAKLFRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQEQQQQPQPPPLQPQDPDPDPDPDQVGASQQQ | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6177260 | 6180379 | - | Hsped.08g06850.1 | Hepe08g0685 | 576657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0685 | 472 | CDD | CIPK_C | 315 | 429 | - | - | |
Hepe08g0685 | 472 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0685 | 472 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe08g0685 | 472 | MobiDBLite | consensus disorder prediction | 436 | 472 | - | - | |
Hepe08g0685 | 472 | Gene3D | Kinase associated domain 1, KA1 | 310 | 434 | - | - | |
Hepe08g0685 | 472 | FunFam | Non-specific serine/threonine protein kinase | 309 | 433 | - | - | |
Hepe08g0685 | 472 | MobiDBLite | consensus disorder prediction | 284 | 302 | - | - | |
Hepe08g0685 | 472 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Hepe08g0685 | 472 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0685 | 472 | ProSiteProfiles | NAF domain profile. | 309 | 333 | IPR018451 | GO:0007165(InterPro) | |
Hepe08g0685 | 472 | MobiDBLite | consensus disorder prediction | 447 | 461 | - | - | |
Hepe08g0685 | 472 | MobiDBLite | consensus disorder prediction | 283 | 310 | - | - | |
Hepe08g0685 | 472 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 5 | 422 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Hepe08g0685 | 472 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Hepe08g0685 | 472 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
Hepe08g0685 | 472 | Pfam | NAF domain | 311 | 369 | IPR004041 | GO:0007165(InterPro) | |
Hepe08g0685 | 472 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0685 | 472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 309 | - | - | |
Hepe08g0685 | 472 | FunFam | Non-specific serine/threonine protein kinase | 2 | 291 | - | - | |
Hepe08g0685 | 472 | CDD | STKc_SnRK3 | 11 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g0695 | Hepe-Chr4:60664754 | Hepe08g0685 | Hepe-Chr8:6177260 | 2.99e-213 | dispersed | |
Hepe07g1855 | Hepe-Chr7:61484865 | Hepe08g0685 | Hepe-Chr8:6177260 | 5.42e-201 | dispersed | |
Hepe08g0685 | Hepe-Chr8:6177260 | Hepe08g2458 | Hepe-Chr8:65577880 | 3.14e-174 | dispersed | |
Hepe04g1300 | Hepe-Chr4:68571890 | Hepe08g0685 | Hepe-Chr8:6177260 | 3.93e-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73037 | PF00069 | Pkinase | 9.40E-75 | CL0016 | Hepe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0685 | - | - | - | 0.0 |