Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0685 ATGGATAATAAGTCGAGTGTGGTGGTTCAAAGATATGAATTCGGGAGATTACTTGGCCAAGGAACCTTTGCAAAGGTATATTATGCGAGGAATACAGGAACTAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCATATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTACATTTATTTGAGGTTATGGCCACCAAGACTAAGATCTACTTCGTCTTGGAATATGCTAAAGGCGGTGAACTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAGGATCTTGCTTGGAAATACTTTTATCAGTTAATCAATGCGGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTCTAGCCGAGTCCAAGCGTCAAGACGGGTTGCTTCACACTACTTGTGGTACACCAGCTTATGTTGCCCCGGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCAAATTTGATGGAGATGTATAGGAAGATTGGACGAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGAATTCCGGAGGCTGCTAAGCAGGATGCTTGATCCAAACCCCATGACTAGAACATCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCTAAGATGTTAAGAAGTGAAATAGAGAGTGATTCTATAGCGACTGAAGATACAGCAGCTGTTTCGGGACCATCTGAGAGTAGTATGCCAGTAGATGAAAATCAAGAGCCGGATAGACCTCCGTCTTTGAATGCTTTTGATATCATCTCCCTTTCTGCAGGGTTCGATCTATCTAGGTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCAAAGCTAGAAGAAATTGCTAAACTTTTTCGGTTTCGAGTGCAGAAGAAGGAAGCAGGCCTACTAAAGTTTGAGGCACTAACAGAGGGAAAAAAGGGGGCATTGTCCATTGATACAGAGATCTTCGAGGTTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCTAATGGGGACACATTGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGTGAGCAAGAGCAAGAGCAACAACAACAACCTCAGCCTCCACCTCTCCAACCCCAGGATCCAGATCCGGATCCGGATCCGGATCAAGTGGGTGCGTCACAACAGCAGTAG 1419 42.07 MDNKSSVVVQRYEFGRLLGQGTFAKVYYARNTGTNQSVAIKVIDKEKITKASLIDHIKREISIMRLVRHPNIVHLFEVMATKTKIYFVLEYAKGGELFDKVAKGRLREDLAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLMEMYRKIGRADYKCPSWFPREFRRLLSRMLDPNPMTRTSIAMIRQSSWFKKGLRSKMLRSEIESDSIATEDTAAVSGPSESSMPVDENQEPDRPPSLNAFDIISLSAGFDLSRLFEDNSKKKETLFTCRKPASVILSKLEEIAKLFRFRVQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQEQQQQPQPPPLQPQDPDPDPDPDQVGASQQQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6177260 6180379 - Hsped.08g06850.1 Hepe08g0685 576657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0685 472 CDD CIPK_C 315 429 - -
Hepe08g0685 472 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0685 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0685 472 MobiDBLite consensus disorder prediction 436 472 - -
Hepe08g0685 472 Gene3D Kinase associated domain 1, KA1 310 434 - -
Hepe08g0685 472 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Hepe08g0685 472 MobiDBLite consensus disorder prediction 284 302 - -
Hepe08g0685 472 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Hepe08g0685 472 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0685 472 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Hepe08g0685 472 MobiDBLite consensus disorder prediction 447 461 - -
Hepe08g0685 472 MobiDBLite consensus disorder prediction 283 310 - -
Hepe08g0685 472 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe08g0685 472 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Hepe08g0685 472 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Hepe08g0685 472 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Hepe08g0685 472 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0685 472 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Hepe08g0685 472 FunFam Non-specific serine/threonine protein kinase 2 291 - -
Hepe08g0685 472 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0695 Hepe-Chr4:60664754 Hepe08g0685 Hepe-Chr8:6177260 2.99e-213 dispersed
Hepe07g1855 Hepe-Chr7:61484865 Hepe08g0685 Hepe-Chr8:6177260 5.42e-201 dispersed
Hepe08g0685 Hepe-Chr8:6177260 Hepe08g2458 Hepe-Chr8:65577880 3.14e-174 dispersed
Hepe04g1300 Hepe-Chr4:68571890 Hepe08g0685 Hepe-Chr8:6177260 3.93e-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73037 PF00069 Pkinase 9.40E-75 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0685 - - - 0.0