Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0701 ATGGCCACCGAGGCGACTGAAGCCACCACCAAGTTCCAGAGTCCGGATTTTCGCCCGGTGCCGTCGCCTCCTGATTTCCATCCTGAGATTGTCGTCTCAGCCCACGACGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCAGTCGCGGGGTCTATTGAGCATATGGCTATGTTTCCTGTCGATACCGTCAAGACCCATATGCAAGCTCTTGGTTCTTGCCCAATTAAATCCGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAGTCGGAGGGCCCTGCTGGTTTTTATCGTGGTATTGGTGCTATGGGTCTCGGAGCTGGACCTGCTCATGCTGTGTATTTTACAGTTTACGAGAATTGTAAGAAGGTTTTCTCTGGTGGGGATCCTAGTAATTCAGTTGCCCACGCCGCTTCCGGTGTTTGTGCGACTGTGGCGAGTGACGCCGTTTTTACCCCGATGGATATGGTTAAGCAGAGGCTGCAGCTGAGTAATAGTCCCTACAAGGGAGTTTTGGATTGTGTCAAAAGGGTACTTAGAGACGAGGGGTTTAAAGCATTTTACGCATCGTATAGAACTACAGTGTTGATGAATGCTCCATTTACTGCTGTGCATTTTTCCACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCTCCAGAGAGTGTAAATGATGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCATCAGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTATATGTGGATGCGATAGATTCAAAAGTGGGTCGATCGGGGACGTCTTTCGGACAATACTAAAGAAGGATGGATATAGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTTTTTCATGCTCCGGCTGCAGCTATCTGCTGGTCGACATATGAAGCGTTAAAATCCTTTTTCCAAGAGGCCAACGACAGCAGCGACAATATGACCTGA 993 48.94 MATEATEATTKFQSPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSVAGSIEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKVFSGGDPSNSVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSPYKGVLDCVKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFSTYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGICGCDRFKSGSIGDVFRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFQEANDSSDNMT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6320678 6324286 - Hsped.08g07010.1 Hepe08g0701 576673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0701 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Hepe08g0701 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Hepe08g0701 330 FunFam Mitochondrial RNA-splicing protein MRS3 167 330 - -
Hepe08g0701 330 Gene3D Mitochondrial carrier domain 168 330 IPR023395 -
Hepe08g0701 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
Hepe08g0701 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Hepe08g0701 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Hepe08g0701 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Hepe08g0701 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Hepe08g0701 330 PANTHER MITOFERRIN-1-RELATED 33 323 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Hepe08g0701 330 Gene3D Mitochondrial carrier domain 20 167 IPR023395 -
Hepe08g0701 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Hepe08g0701 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Hepe08g0701 330 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Hepe08g0701 330 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
Hepe08g0701 330 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0701 Hepe-Chr8:6320678 Hepe10g0782 Hepe-Chr10:15047223 6.37e-36 dispersed
Hepe04g0728 Hepe-Chr4:61144111 Hepe08g0701 Hepe-Chr8:6320678 1.50e-155 transposed
Hepe06g1543 Hepe-Chr6:66140270 Hepe08g0701 Hepe-Chr8:6320678 6.07e-37 transposed
Hepe02g3214 Hepe-Chr2:81683422 Hepe08g0701 Hepe-Chr8:6320678 1.03e-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0701 K15113 - csv:101215924 624.394