Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0703 ATGGGAGCTTGTTCATCGCCATGTGCATCCTGCAAATATCTACGACGACGGTGCACGACGGACTGCGTGTTTGCCCCTTATTTTCCTTCCGATGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTACAGGAGCTTCCAGTAGATCATAGAGTAGATGCAGTGAGCAGTATGGTATACGAAGCGAGCGCAAGAATGCGGGATCCAGTATACGGTTGTGTTGGAGCAATCTCATTTCTGCAAAACGAAGTGTCGCGATTGGAAATGCAGCTGGCGACGGCACAAGCGGAGATATTATACTTACAGATGCAACAACGGCCTGCGGCTCCGACGACATTTTCGACGACGGAAATGGACACAGATGATCAAAAGCTAGTGTTTTTCTCAAATGCTGATTCTTCTAAATATTCCATCGACACTTTCCAGGAAGAGGAAGATTATTACTCTCTATGGACTTGA 486 46.5 MGACSSPCASCKYLRRRCTTDCVFAPYFPSDDPHKFAIVHKIFGASNVSKMLQELPVDHRVDAVSSMVYEASARMRDPVYGCVGAISFLQNEVSRLEMQLATAQAEILYLQMQQRPAAPTTFSTTEMDTDDQKLVFFSNADSSKYSIDTFQEEEDYYSLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6338705 6339791 + Hsped.08g07030.1 Hepe08g0703 576675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0703 161 Coils Coil 86 106 - -
Hepe08g0703 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Hepe08g0703 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
Hepe08g0703 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0630 Hepe-Chr8:5603072 Hepe08g0703 Hepe-Chr8:6338705 2.39e-55 dispersed
Hepe08g0703 Hepe-Chr8:6338705 Hepe09g0225 Hepe-Chr9:1949857 6.06e-45 dispersed
Hepe01g0685 Hepe-Chr1:69160164 Hepe08g0703 Hepe-Chr8:6338705 3.43e-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56147 PF03195 LOB 5.70E-41 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0703 - - - 0.0