Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0724 ATGATGTGCAATGGTTGCAATAGGAAATCTGGAAGCCCTAATTTCGTGATGGACGGTGGATTTAAGCGAGGGGGATTGGGGTTTTGTATCTCTGTTTTGCTCGAATTTTCCGCTACTGATGATCTGATTGGGTTTAGAAGTGCTATTGAGGAAGATTGTCATGATATTGATGAGGCAAGTTTGTGGTATGGGAGAATTTTTGGTTCGAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTGTTTTATATCATTCACAGTGGTCGTGTGGATGTTAATCGGGCTTGTGGTTCGGATGGCGCAACGGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCGGATCAGGTTGTCAAACTCTTGCTTGACGCTTCTGCTGATGTGAATGCTGTCGATGCTAACGGTAACCGGCCTGGTGACTTGATTGCTCCTGATTTTACTTTCGCCTCTTTCTATTCGAGGAAAAAGGCATTACAGCAATTGCTAAATGGCTGTGGTAACGACGAAGAAGTCCTTGGTTCATCCGAGGCGATATTTTACGAGAGAGATATGCAGGAGCCACGGGAGGTTTTGACCCCTCGGGTTTCGAGAGATGGGACGGAGAAGAAAGAGTATCCCGTTGATCTCTCACTTCCAGACATCAAGAATGGAATATATAGCACAGATGAGTTTAGAATGTTTACATTCAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCGAGGAAATACCATTACAGCTGCGTCCCGTGTCCCGAATTCAGAAAGGGTACATGTAGGCAGGGGGATGCCTGTGATTATGCTCATGGAATTTTTGAATGTTGGCTACATCCTGCTCAATACCGAACCCGTCTTTGCAAGGATGAAATTGGATGCACCAGAAAAGTCTGTTTCTTTGCGCACAAACCAGAAGACCTCCGACCCTTGTATGCTTCGACCGGTTCTGCTGTACTGTCCCCAAGATCAATCTGTGGTTCTTCACTAGACATTGCGTCAATCAGCTCGCTTACTCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCGCCCATGACTCCTTCTGGAGTTTCTTCTCCAATGTCTGGTACCATGTGGCAGACTCAATGTAATATTGCCCCTCCGACCTTGCAGCTTCCGGGTAGCAGGTTGAAGGCTGCTTTGAGCGCGAGAGACATGGAATTAGATGTTGAGTTTCTTAATCTCGAAAGTCACCGCCGTCGACAGCAACAACAGTTCATGGATGAGATGTCCTGTCTGCCTTCCCCTTCCAGGTGGAACAATGGCTTGTCAACCCCTGCATCTTTTCCATCCCCAAGGAGTAGAAATGGGGAATTTAATGGACTTGGAGGCATGAAGCCTTCTAACCTCGAGGACATGTTCGGGCAGGTAGATCCCACTCAATTACAAGGACTTACATTGGATTCTGTACAATCCCCTTCCGGGATTCAGATGCGCCAAAGTCTGAATCAGTCTTTCCTCTCGAGCTATGCTAACGGCCTTGGATCCCCTCCTGGAAGGTCGTCTCAACCATTTGGCATCGACCCAAGCGTTCTGAGTTCCAGGGCTGCTGCTTTCGCCAAGCGGAGCCAGAGCTTTATCGAACGTAGTGTGGTGAACCGTCATTCTGGATTTTCACCCCCGGCGACATCTACAACTGCCATGCCTTTGAACCTGTCTGATTGGGGTTCACCCGATGGGAAACTAGATTGGGGAATTCGTGGAGAAGAACTGAACAAATTAAGGAAGTCTTCATCATTTGGGCTTCGAAGCAATTCTCTGGCAACATCCACAATGCACGCTACCGCTCCCGAGCCAGATGTGTCTTGGGTTCAGTCCTTGGTGAAGGATGCTCCAACCGAGAACTCTGTGCAGTTGAGTGTGGATGAGCAGCAGCTTTGTCATCTCGACAATGGCGATACGAAGCAAATGTACATGGAACAGGAGCAGTTGGTTGCTTAA 2055 47.93 MMCNGCNRKSGSPNFVMDGGFKRGGLGFCISVLLEFSATDDLIGFRSAIEEDCHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLFYIIHSGRVDVNRACGSDGATALHCAVAGGSAVSDQVVKLLLDASADVNAVDANGNRPGDLIAPDFTFASFYSRKKALQQLLNGCGNDEEVLGSSEAIFYERDMQEPREVLTPRVSRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMFTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACDYAHGIFECWLHPAQYRTRLCKDEIGCTRKVCFFAHKPEDLRPLYASTGSAVLSPRSICGSSLDIASISSLTLGSPSALIPPSSTPPMTPSGVSSPMSGTMWQTQCNIAPPTLQLPGSRLKAALSARDMELDVEFLNLESHRRRQQQQFMDEMSCLPSPSRWNNGLSTPASFPSPRSRNGEFNGLGGMKPSNLEDMFGQVDPTQLQGLTLDSVQSPSGIQMRQSLNQSFLSSYANGLGSPPGRSSQPFGIDPSVLSSRAAAFAKRSQSFIERSVVNRHSGFSPPATSTTAMPLNLSDWGSPDGKLDWGIRGEELNKLRKSSSFGLRSNSLATSTMHATAPEPDVSWVQSLVKDAPTENSVQLSVDEQQLCHLDNGDTKQMYMEQEQLVA 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6521381 6524794 - Hsped.08g07240.1 Hepe08g0724 576696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0724 684 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Hepe08g0724 684 ProSiteProfiles Zinc finger C3H1-type profile. 280 302 IPR000571 GO:0046872(InterPro)
Hepe08g0724 684 Gene3D - 276 338 - -
Hepe08g0724 684 FunFam Zinc finger CCCH domain-containing protein 66 233 301 - -
Hepe08g0724 684 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515(InterPro)
Hepe08g0724 684 Gene3D - 47 173 IPR036770 -
Hepe08g0724 684 SUPERFAMILY Ankyrin repeat 72 152 IPR036770 -
Hepe08g0724 684 SMART ANK_2a 75 105 IPR002110 GO:0005515(InterPro)
Hepe08g0724 684 SMART ANK_2a 110 142 IPR002110 GO:0005515(InterPro)
Hepe08g0724 684 SMART c3hfinal6 310 333 IPR000571 GO:0046872(InterPro)
Hepe08g0724 684 SMART c3hfinal6 275 301 IPR000571 GO:0046872(InterPro)
Hepe08g0724 684 PANTHER UNKEMPT FAMILY MEMBER 72 649 IPR045234 -
Hepe08g0724 684 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0724 Hepe-Chr8:6521381 Hepe09g0842 Hepe-Chr9:8293413 1.13e-54 dispersed
Hepe02g1233 Hepe-Chr2:15406189 Hepe08g0724 Hepe-Chr8:6521381 7.26e-149 transposed
Hepe05g0577 Hepe-Chr5:8188247 Hepe08g0724 Hepe-Chr8:6521381 1.14e-157 transposed
Hepe01g0712 Hepe-Chr1:69671954 Hepe08g0724 Hepe-Chr8:6521381 7.91e-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56151 PF12796 Ank_2 1.80E-07 CL0465 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0724 - - - 0.0