Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0796 ATGGAGGATGAGAATAATGGCGGCTCTTTTCGGAGTTTGATCGAATTGGTGAACGATGTAGCTTCAATCTCAGATTATAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGCTGATCCCAATGTTTGAAGAGATGAGGGATTTGAAGCAGGCGCTGCCGGATGATACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAAGATTAATCTGGCCTTGGAGAGAGAGCAAAGTTTGAATCAATTTCACAAGGTGACAACAAGACTAGAGCAAGCTGTGACTGAAATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGAAAAGATTGATACACAAGATGCCGAGCTGTATGTTAACCTCCACTCTCTCTATACCAACAGCAAAGACTCTGCTACTGATGCTTCTGTCTTGAGGGGACTGGCTGAGAAGTTGCAGTTGATGGATATAGATGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATCTTATGCTAACTGAAAACCCTGAAATTGGCGTTTCTTCGAAAGAACAAAGTCATCCTCGCACTGGTGGACAGGCGACTGCTGGGAAGAAAGATATAACGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACCTATGAACGTATTTTCATTGAGAAGTGGCTGGCAGAAGGACACTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAATCTCTTACACCAAATTATGCCTTACGCAGTCTCATAGCTCAATGGTGTGAGACCAATGGGGTTGAACCACCACAACGTTCCAGCAGTTCTCAGGCCAGTGAATTGATGACGCCTGCTGAACGCTCCAAGTATGAAACTCTTCTACACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAACGCAGATAATCGTGTCGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGCCTCCTTTCAATAACGGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTCAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCGCCTGGCATAGTCCATGTGCTGAGGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTAGACGAATATAAAGTAACGATTGGCGCAGCGGGAGCCATTCTGCCACTTATTACACTGCTCAATGAAGGTACTCAAAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTATGTTTCTACCAAGGGAACAAGGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTGGCCAGCAATTCTGAAGGGCGGGCTGCCATCGGAGCAGCCAAATCCGTACCCGTTTTACTAGATTTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGCGCAGCAGACAAACGACATCTCGTGGAGGCGAAGGAGCTCGGAGTGATTAGTTTGCTCATAGATTTGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTCGACCAAATAAACAGGTTTACGGAGCAGCAGAAAGAGGCCGAGCCTCAGCCTCAGCCTCCGATCCACCTGTTGCTACCGCCACCTTCCACGATCGGCAACGTCGAAAGCTGA 1983 46.75 MEDENNGGSFRSLIELVNDVASISDYRYAVRKQYCNLARRLKLLIPMFEEMRDLKQALPDDTVRALASLKEALESTKELLRLGSEGSKINLALEREQSLNQFHKVTTRLEQAVTEISHEDLDISDEVKEQVELVLSQFKRAREKIDTQDAELYVNLHSLYTNSKDSATDASVLRGLAEKLQLMDIDDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDLMLTENPEIGVSSKEQSHPRTGGQATAGKKDITSLHIPEDFRCPISLDLMKDPVIVSTGQTYERIFIEKWLAEGHSTCPKTQQVLTSKSLTPNYALRSLIAQWCETNGVEPPQRSSSSQASELMTPAERSKYETLLHKLTSGNIEDKRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSITDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLRWGSMEARENAAATLFSLSVVDEYKVTIGAAGAILPLITLLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPVLLDFIATGSPRNRENAAAVLVHLCAADKRHLVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEPQPQPPIHLLLPPPSTIGNVES 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7142474 7146702 + Hsped.08g07960.1 Hepe08g0796 576768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0796 660 MobiDBLite consensus disorder prediction 631 660 - -
Hepe08g0796 660 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Hepe08g0796 660 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Hepe08g0796 660 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 Pfam Armadillo/beta-catenin-like repeat 467 504 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 258 332 - -
Hepe08g0796 660 Gene3D - 338 493 IPR011989 -
Hepe08g0796 660 PANTHER U BOX DOMAIN-CONTAINING 30 628 - -
Hepe08g0796 660 Gene3D - 494 637 IPR011989 -
Hepe08g0796 660 CDD RING-Ubox_PUB 260 312 IPR045210 -
Hepe08g0796 660 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 465 505 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 589 629 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 424 464 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 547 587 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Hepe08g0796 660 SUPERFAMILY RING/U-box 253 334 - -
Hepe08g0796 660 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 337 634 - -
Hepe08g0796 660 SUPERFAMILY ARM repeat 355 633 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0796 K27628 - - csv:101221150 1096.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1283 Hepe-Chr4:68413092 Hepe08g0796 Hepe-Chr8:7142474 1.71e-16 dispersed
Hepe07g1836 Hepe-Chr7:61148643 Hepe08g0796 Hepe-Chr8:7142474 2.09e-55 dispersed
Hepe07g2250 Hepe-Chr7:66888200 Hepe08g0796 Hepe-Chr8:7142474 2.16e-10 dispersed
Hepe08g0340 Hepe-Chr8:3066365 Hepe08g0796 Hepe-Chr8:7142474 1.68e-85 dispersed
Hepe08g0796 Hepe-Chr8:7142474 Hepe10g0096 Hepe-Chr10:891512 8.52e-31 dispersed
Hepe01g0523 Hepe-Chr1:63935206 Hepe08g0796 Hepe-Chr8:7142474 1.83e-67 transposed
Hepe01g1046 Hepe-Chr1:75165057 Hepe08g0796 Hepe-Chr8:7142474 1.60e-139 transposed
Hepe02g2667 Hepe-Chr2:74293810 Hepe08g0796 Hepe-Chr8:7142474 1.61e-64 transposed
Hepe04g1715 Hepe-Chr4:72229193 Hepe08g0796 Hepe-Chr8:7142474 6.63e-16 transposed
Hepe06g1836 Hepe-Chr6:69477124 Hepe08g0796 Hepe-Chr8:7142474 3.13e-40 transposed
Hepe08g1331 Hepe-Chr8:15233009 Hepe08g0796 Hepe-Chr8:7142474 3.42e-14 transposed
Hepe08g1949 Hepe-Chr8:52935123 Hepe08g0796 Hepe-Chr8:7142474 1.57e-36 transposed
Hepe10g1222 Hepe-Chr10:47330852 Hepe08g0796 Hepe-Chr8:7142474 2.37e-183 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25