Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0796 ATGGAGGATGAGAATAATGGCGGCTCTTTTCGGAGTTTGATCGAATTGGTGAACGATGTAGCTTCAATCTCAGATTATAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGCTGATCCCAATGTTTGAAGAGATGAGGGATTTGAAGCAGGCGCTGCCGGATGATACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAAGATTAATCTGGCCTTGGAGAGAGAGCAAAGTTTGAATCAATTTCACAAGGTGACAACAAGACTAGAGCAAGCTGTGACTGAAATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGAAAAGATTGATACACAAGATGCCGAGCTGTATGTTAACCTCCACTCTCTCTATACCAACAGCAAAGACTCTGCTACTGATGCTTCTGTCTTGAGGGGACTGGCTGAGAAGTTGCAGTTGATGGATATAGATGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATCTTATGCTAACTGAAAACCCTGAAATTGGCGTTTCTTCGAAAGAACAAAGTCATCCTCGCACTGGTGGACAGGCGACTGCTGGGAAGAAAGATATAACGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACCTATGAACGTATTTTCATTGAGAAGTGGCTGGCAGAAGGACACTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAATCTCTTACACCAAATTATGCCTTACGCAGTCTCATAGCTCAATGGTGTGAGACCAATGGGGTTGAACCACCACAACGTTCCAGCAGTTCTCAGGCCAGTGAATTGATGACGCCTGCTGAACGCTCCAAGTATGAAACTCTTCTACACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAACGCAGATAATCGTGTCGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGCCTCCTTTCAATAACGGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTCAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCGCCTGGCATAGTCCATGTGCTGAGGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTTGTAGACGAATATAAAGTAACGATTGGCGCAGCGGGAGCCATTCTGCCACTTATTACACTGCTCAATGAAGGTACTCAAAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTATGTTTCTACCAAGGGAACAAGGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTGGCCAGCAATTCTGAAGGGCGGGCTGCCATCGGAGCAGCCAAATCCGTACCCGTTTTACTAGATTTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGCGCAGCAGACAAACGACATCTCGTGGAGGCGAAGGAGCTCGGAGTGATTAGTTTGCTCATAGATTTGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTCGACCAAATAAACAGGTTTACGGAGCAGCAGAAAGAGGCCGAGCCTCAGCCTCAGCCTCCGATCCACCTGTTGCTACCGCCACCTTCCACGATCGGCAACGTCGAAAGCTGA 1983 46.75 MEDENNGGSFRSLIELVNDVASISDYRYAVRKQYCNLARRLKLLIPMFEEMRDLKQALPDDTVRALASLKEALESTKELLRLGSEGSKINLALEREQSLNQFHKVTTRLEQAVTEISHEDLDISDEVKEQVELVLSQFKRAREKIDTQDAELYVNLHSLYTNSKDSATDASVLRGLAEKLQLMDIDDLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDLMLTENPEIGVSSKEQSHPRTGGQATAGKKDITSLHIPEDFRCPISLDLMKDPVIVSTGQTYERIFIEKWLAEGHSTCPKTQQVLTSKSLTPNYALRSLIAQWCETNGVEPPQRSSSSQASELMTPAERSKYETLLHKLTSGNIEDKRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSITDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLRWGSMEARENAAATLFSLSVVDEYKVTIGAAGAILPLITLLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPVLLDFIATGSPRNRENAAAVLVHLCAADKRHLVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEPQPQPPIHLLLPPPSTIGNVES 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7142474 7146702 + Hsped.08g07960.1 Hepe08g0796 576768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0796 660 MobiDBLite consensus disorder prediction 631 660 - -
Hepe08g0796 660 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Hepe08g0796 660 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Hepe08g0796 660 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 Pfam Armadillo/beta-catenin-like repeat 467 504 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 258 332 - -
Hepe08g0796 660 Gene3D - 338 493 IPR011989 -
Hepe08g0796 660 PANTHER U BOX DOMAIN-CONTAINING 30 628 - -
Hepe08g0796 660 Gene3D - 494 637 IPR011989 -
Hepe08g0796 660 CDD RING-Ubox_PUB 260 312 IPR045210 -
Hepe08g0796 660 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 465 505 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 589 629 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 424 464 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 547 587 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Hepe08g0796 660 SUPERFAMILY RING/U-box 253 334 - -
Hepe08g0796 660 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515(InterPro)
Hepe08g0796 660 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0796 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Hepe08g0796 660 FunFam RING-type E3 ubiquitin transferase 337 634 - -
Hepe08g0796 660 SUPERFAMILY ARM repeat 355 633 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1283 Hepe-Chr4:68413092 Hepe08g0796 Hepe-Chr8:7142474 1.71e-16 dispersed
Hepe07g1836 Hepe-Chr7:61148643 Hepe08g0796 Hepe-Chr8:7142474 2.09e-55 dispersed
Hepe07g2250 Hepe-Chr7:66888200 Hepe08g0796 Hepe-Chr8:7142474 2.16e-10 dispersed
Hepe08g0340 Hepe-Chr8:3066365 Hepe08g0796 Hepe-Chr8:7142474 1.68e-85 dispersed
Hepe08g0796 Hepe-Chr8:7142474 Hepe10g0096 Hepe-Chr10:891512 8.52e-31 dispersed
Hepe01g0523 Hepe-Chr1:63935206 Hepe08g0796 Hepe-Chr8:7142474 1.83e-67 transposed
Hepe01g1046 Hepe-Chr1:75165057 Hepe08g0796 Hepe-Chr8:7142474 1.60e-139 transposed
Hepe02g2667 Hepe-Chr2:74293810 Hepe08g0796 Hepe-Chr8:7142474 1.61e-64 transposed
Hepe04g1715 Hepe-Chr4:72229193 Hepe08g0796 Hepe-Chr8:7142474 6.63e-16 transposed
Hepe06g1836 Hepe-Chr6:69477124 Hepe08g0796 Hepe-Chr8:7142474 3.13e-40 transposed
Hepe08g1331 Hepe-Chr8:15233009 Hepe08g0796 Hepe-Chr8:7142474 3.42e-14 transposed
Hepe08g1949 Hepe-Chr8:52935123 Hepe08g0796 Hepe-Chr8:7142474 1.57e-36 transposed
Hepe10g1222 Hepe-Chr10:47330852 Hepe08g0796 Hepe-Chr8:7142474 2.37e-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0796 K27628 - csv:101221150 1096.65