Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0797 ATGGCTCACTCTTCTCTTCCAATCTTTTTAGATCCCTCAAATTGGCAGCAGTCGAATCAGCTGCCACCGGCAACAAATGATGATCATCAAGACCCACGTCAGCTTCCGGCGGCGTTCCTACCGCCTCCGCCGCCGCCTACGGGTTCTCATGGAGGCGGAATCCGACCGGGTTCGATGGCGTACAGAGCGCGGCTGGCGATGATACCGCAGCCGGAGACGGCACTGAAATGCCCACGTTGTGATTCTACAAACACGAAATTCTGTTATTTCAATAATTACAGCCTTACTCAGCCACGCCATTTCTGTAAAACCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAATGTCCCCGTCGGTGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCGATCTAAGTCCCCCACTGCCACTCAAACTCAAATGGGTAATTCGAGATCAATTATGGGTGGTGCAATAATCTCTACAAGCTGCAACATTGAGAGCACCACAATGAGCCATTTCCCATCACAGCCATTACAATTACCTTCAATTCCATCTCTTCAACAACATCTTTCTCGTTTTGGAAACAACTCAGGCCTGAACTTCGCCGGAATTCACATCGGAAACATGAATTCAGGCAGAGAATTCGACCAATGGCAGCGATCACAGCAACAACCGCCGTTCATCGTCGCGGGACTCGAACCTCCTCCTCCGATGGCGGCCGCCACATACCCACAAAACCTTCAAAGTGAAGTCAACAACAACAACTTTGAGGCTAACTCATTATCTTTACAATATAATTGTCATCAACAACTTCAGAATTTGACAACTTTTTCGAGAATTCCATCGAAAAACGAACAACAAAATCAAAATCAAAACCAAAATCAAGAACAAGGAATAGTATTATCGAACTTTTTACGACCAGCTGATCAAAACAACCAGTTTTGGGGAGGTGATCATCATCAAAATTCATGGACGGATTTATCAGCTCTCAGCTCATCTTCAAGCAGCCATCTTTTGTAA 1017 46.61 MAHSSLPIFLDPSNWQQSNQLPPATNDDHQDPRQLPAAFLPPPPPPTGSHGGGIRPGSMAYRARLAMIPQPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRKNKKKKKSNRSKSPTATQTQMGNSRSIMGGAIISTSCNIESTTMSHFPSQPLQLPSIPSLQQHLSRFGNNSGLNFAGIHIGNMNSGREFDQWQRSQQQPPFIVAGLEPPPPMAAATYPQNLQSEVNNNNFEANSLSLQYNCHQQLQNLTTFSRIPSKNEQQNQNQNQNQEQGIVLSNFLRPADQNNQFWGGDHHQNSWTDLSALSSSSSSHLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7152359 7154811 - Hsped.08g07970.1 Hepe08g0797 576769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0797 338 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g0797 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 291 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0797 338 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g0797 338 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g0797 338 MobiDBLite consensus disorder prediction 119 150 - -
Hepe08g0797 338 MobiDBLite consensus disorder prediction 1 57 - -
Hepe08g0797 338 MobiDBLite consensus disorder prediction 36 50 - -
Hepe08g0797 338 MobiDBLite consensus disorder prediction 9 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0797 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0797 Hepe-Chr8:7152359 Hepe08g0855 Hepe-Chr8:7793042 4.86e-34 dispersed
Hepe01g0799 Hepe-Chr1:71828666 Hepe08g0797 Hepe-Chr8:7152359 2.62e-38 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe08g0797 Hepe-Chr8:7152359 8.04e-48 wgd
Hepe04g0864 Hepe-Chr4:62891157 Hepe08g0797 Hepe-Chr8:7152359 5.02e-40 wgd
Hepe05g0180 Hepe-Chr5:2229298 Hepe08g0797 Hepe-Chr8:7152359 9.12e-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1473 . 12 153 C2C2-Dof Transcription Factor Family AT1G51700 55.3 3.0e-37 152.1
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT1G29160 68.8 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT2G34140 64.3 9.8e-40 160.2
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-38 156.0
Hepe05g0180 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.5e-41 165.6
Hepe02g3032 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 64.7 1.4e-37 154.1
Hepe06g1450 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 78.8 5.0e-43 172.2
Hepe08g0797 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 57.7 1.9e-38 157.1
Hepe10g1221 . 57 138 C2C2-Dof Transcription Factor Family AT5G02460 85.4 4.3e-38 156.0
Hepe04g0864 . 34 126 C2C2-Dof Transcription Factor Family AT3G55370 72.3 1.3e-36 151.0
Hepe09g0293 . 24 327 C2C2-Dof Transcription Factor Family AT5G60850 50.5 2.2e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013041 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 0 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56156 PF02701 zf-Dof 2.10E-32 No_clan Hepe TF