Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0848 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGATTCTGAAAGAGGATTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGATGATTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCAAGATATTGAAGGCTGGAAGCGAGAACGACGTTGTCACGAAGGAGCTTTTTCCGATAGGTGGAACGGTGAATGCTGATTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGTAGGGGAAGCGAGAATGGTTCAGCCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAAGTCTATCTCGGTGGATTCGACACTGCTCATTCTGCAGCAAGAGCATATGATCGAGCCGCTATCAAGTTCAGAGGGGTCGAAGCTGACATTAATTTCAATCTTATTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGGTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGACTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCGCATACGAAGGAGAGCGAGTTTCTGAGGGCAACGGTGAAGGTGGTCGAAACATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCACTTGATAACTGTCCAAAGGATAATGAGGGGCCTCTCCGATTCCAACCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAACGCTGGTGCAGCAGTTGGCGATCCGCCTTTGAAAGGACTGGTAATGACATCGGAGCATGCTCCCATATGGAATGGTTTACAATCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTTCCCAATTGGGCATGGCAAATTCATGGGCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCTATCCACCGCGCCAACCGGGCTCGATGGCCCATAATCTCCACCATTTCACTTCTGCCAAAGCTTCTTCCCTCATCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGGCACCACCATAA | 1494 | 49.6 | MFDLNLNVDSPDAILKEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFKILKAGSENDVVTKELFPIGGTVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSVGEARMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFNLIDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYEGERVSEGNGEGGRNMLDLNLGISPPSLDNCPKDNEGPLRFQPGPCYANDRSTMMESNAGAAVGDPPLKGLVMTSEHAPIWNGLQSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIYPPRQPGSMAHNLHHFTSAKASSLINSPQYHHQLNPQQAPP | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7688552 | 7692454 | - | Hsped.08g08480.1 | Hepe08g0848 | 576820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0848 | 497 | CDD | AP2 | 157 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | FunFam | AP2-like ethylene-responsive transcription factor | 248 | 308 | - | - | |
Hepe08g0848 | 497 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 81 | 324 | - | - | |
Hepe08g0848 | 497 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677(InterPro) | |
Hepe08g0848 | 497 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Hepe08g0848 | 497 | SUPERFAMILY | DNA-binding domain | 156 | 213 | IPR016177 | GO:0003677(InterPro) | |
Hepe08g0848 | 497 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
Hepe08g0848 | 497 | MobiDBLite | consensus disorder prediction | 131 | 158 | - | - | |
Hepe08g0848 | 497 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Hepe08g0848 | 497 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | Pfam | AP2 domain | 248 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0848 | 497 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe08g0848 | Hepe-Chr8:7688552 | 3.09e-80 | dispersed | |
Hepe04g1257 | Hepe-Chr4:68074587 | Hepe08g0848 | Hepe-Chr8:7688552 | 9.84e-112 | dispersed | |
Hepe08g0848 | Hepe-Chr8:7688552 | Hepe10g1430 | Hepe-Chr10:50968401 | 1.25e-110 | dispersed | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe08g0848 | Hepe-Chr8:7688552 | 4.70e-119 | wgd | |
Hepe05g0230 | Hepe-Chr5:2708197 | Hepe08g0848 | Hepe-Chr8:7688552 | 1.88e-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56161 | PF00847 | AP2 | 3.10E-09 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0848 | K09284 | - | csv:101222024 | 875.93 |