Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0848 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGATTCTGAAAGAGGATTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGATGATTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCAAGATATTGAAGGCTGGAAGCGAGAACGACGTTGTCACGAAGGAGCTTTTTCCGATAGGTGGAACGGTGAATGCTGATTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGTAGGGGAAGCGAGAATGGTTCAGCCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAAGTCTATCTCGGTGGATTCGACACTGCTCATTCTGCAGCAAGAGCATATGATCGAGCCGCTATCAAGTTCAGAGGGGTCGAAGCTGACATTAATTTCAATCTTATTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGGTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGACTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCGCATACGAAGGAGAGCGAGTTTCTGAGGGCAACGGTGAAGGTGGTCGAAACATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCACTTGATAACTGTCCAAAGGATAATGAGGGGCCTCTCCGATTCCAACCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAACGCTGGTGCAGCAGTTGGCGATCCGCCTTTGAAAGGACTGGTAATGACATCGGAGCATGCTCCCATATGGAATGGTTTACAATCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTTCCCAATTGGGCATGGCAAATTCATGGGCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCTATCCACCGCGCCAACCGGGCTCGATGGCCCATAATCTCCACCATTTCACTTCTGCCAAAGCTTCTTCCCTCATCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1494 49.6 MFDLNLNVDSPDAILKEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFKILKAGSENDVVTKELFPIGGTVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSVGEARMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFNLIDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYEGERVSEGNGEGGRNMLDLNLGISPPSLDNCPKDNEGPLRFQPGPCYANDRSTMMESNAGAAVGDPPLKGLVMTSEHAPIWNGLQSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIYPPRQPGSMAHNLHHFTSAKASSLINSPQYHHQLNPQQAPP 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7688552 7692454 - Hsped.08g08480.1 Hepe08g0848 576820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0848 497 CDD AP2 157 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Hepe08g0848 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 324 - -
Hepe08g0848 497 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Hepe08g0848 497 MobiDBLite consensus disorder prediction 30 58 - -
Hepe08g0848 497 SUPERFAMILY DNA-binding domain 156 213 IPR016177 GO:0003677(InterPro)
Hepe08g0848 497 MobiDBLite consensus disorder prediction 28 58 - -
Hepe08g0848 497 MobiDBLite consensus disorder prediction 131 158 - -
Hepe08g0848 497 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Hepe08g0848 497 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0848 497 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0877 Hepe-Chr1:72899616 Hepe08g0848 Hepe-Chr8:7688552 3.09e-80 dispersed
Hepe04g1257 Hepe-Chr4:68074587 Hepe08g0848 Hepe-Chr8:7688552 9.84e-112 dispersed
Hepe08g0848 Hepe-Chr8:7688552 Hepe10g1430 Hepe-Chr10:50968401 1.25e-110 dispersed
Hepe04g0911 Hepe-Chr4:63387122 Hepe08g0848 Hepe-Chr8:7688552 4.70e-119 wgd
Hepe05g0230 Hepe-Chr5:2708197 Hepe08g0848 Hepe-Chr8:7688552 1.88e-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56161 PF00847 AP2 3.10E-09 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0848 K09284 - csv:101222024 875.93