Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0853 ATGGACGAGTTCTTGGACAATATACCGCCCATGGATCTGATGCGTTCCGAGAAGATGAGTTTTGTCCAGCTTATCATCCCCGTCGAGTCCGCTCATCGAGCCATTTCGTACCTTGGCGAGCTTGGCATCCTTCAATTCAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTGAGATTTTTCAAAGATCAAATCAATAAAGCTGGTGTACTGTCATCTACACGACCAATACTTCAAGAACACATTGAGCTAGAGGATTTAGAGATACGACTAGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATTCAATGAACTCTTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAGTGAAAATGTTTTCTTGAATGATAACTATGTTCATGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCGTCCAACCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAGGTTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTATGGAAATGGTTGAGAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAAATAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCCGTTCCTGAAGATATAACCAAACAAAGGCAGATAATTAGAGAAGTTTCATCTCGCCTCACTGATCTTGAAGCCACTTTAGATGCTGGGACCCGTCACCGAAATGAGGCTCTTGCATCGATAGGGTTTCACCTTATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATACGATACATTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAAACTGAGATTCAGGAGGCACTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGCACAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAATCGTTTGACAAGTGCTTTTCAGGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCGTTCCTATTCGCAGTGATGTTTGGAGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGCAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGTGCGTCTGCTTACAAGTGTCGCGATAATTCATGCAGTGATGCATACACTGTTGGGTTAATTAAATACCGTGGTGCCTATCCATTTGGTGTTGACCCGAGTTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATTATGAGTTATTTTAATGCACGTTTTACTGGAAGCTCAATTGATATCAGGTACCAGTTTATACCACAAGTGATCTTTCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTCTCCTCAAGTGGTGCACTGGATCTCAAGCAGACCTTTATCATGTGATGATTTACATGTTTTTAAGTCCATTTGAAGATCTTGGTGAGAACGAATTGTTTTGGGGCCAGAGACCTCTTCAAATTATCTTGTTGATGTTGGCTGTAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACATATGGGGTGCTTGGAACCTCTGAGATTGATCTTGAGGCCGAACCTGATTCGGCAAGGCAACACCAAGAAGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTCCTCCTAGCTTGGGGGTATGACAGCTTTGTAATCCGGCTGATTGGTTTGGCTGTTTTTTCTTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTAGCGCCTTCCTTCATGCCTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAAACCTTTTTCCTTTGCCTCTCTCGATGAGGATGAAGATTAA 2460 40.45 MDEFLDNIPPMDLMRSEKMSFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGVLSSTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSFNELLEFKMVLQKASVFLVSSNSHSVSEERELSENVFLNDNYVHDGSLLEQEMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISMEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQIIREVSSRLTDLEATLDAGTRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTEIQEALQRATFDSSSQVGTIFHVMDTVESPPTYFRTNRLTSAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAYTVGLIKYRGAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIIMSYFNARFTGSSIDIRYQFIPQVIFLNSLFGYLSLLILLKWCTGSQADLYHVMIYMFLSPFEDLGENELFWGQRPLQIILLMLAVVAVPWMLFPKPFILKKIHTERFQGRTYGVLGTSEIDLEAEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLDEDED 819
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 7745608 7757872 - Hsped.08g08530.1 Hepe08g0853 576825

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0853 819 PANTHER VACUOLAR PROTON ATPASES 11 817 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Hepe08g0853 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Hepe08g0853 819 Coils Coil 93 127 - -
Hepe08g0853 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0853 K02154 - - csv:101216514 1577.76
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0483 Hepe-Chr2:4720585 Hepe08g0853 Hepe-Chr8:7745608 5.31e-265 dispersed
Hepe08g0853 Hepe-Chr8:7745608 Hepe10g0122 Hepe-Chr10:1207675 6.73e-320 transposed
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g328 . . Bda02g00785 Bda09g01479 Bpe01g00166 . . . . . . . . . . Cpe05g00871 . . . . . . . . Cla02g02031 Cam02g2151 Cec02g2193 Cco02g2230 Clacu02g2138 Cmu02g2073 Cre02g2386 . . . . . . Chy11g01306 Cme11g01758 . . . . Bpe08g00136 . Bma07g00127 . Sed01g0903 Cmo02g00864 Cmo20g00495 Cma02g00864 Cma20g00461 Car02g00626 Car20g00400 . . Bhi10g00598 Tan05g0297 Cmetu03g1529 . Hepe08g0853 . . . . . . . . . . . . .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe03g2130 . 1 623 Primary Pumps ATPases(2) AT1G78900 92.9 0.0e+00 1168.3
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe02g1671 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 2.0e-75 279.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 1.2e-198 689.1
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115