Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0862 ATGGAAGGCACTGACACATTCACCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTCCTCCTCCGTCTCCCCCGCCGCCCGTCGTTCTCAGTCCTTGCGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCCGAGCGATGTGTATTGGCGCCCTATTTCCCGCCCACTGATCCGGCAAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAATTCGTGCAGGATCTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGTTTGGTATACGAAGCAAGTGCGAGGATCAGAGACCCTGTTTACGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTGAATGAGCTTCAAGCGCAGCTAGCCAAGTCCCAGGCGGAGCTCGTCAACATGCAATGCCAACAAGCCAATCTCATGGCCTTCGTTTGCAGGGAATTAGCTCACTCTCACCATCAGTCTTTTGATGATTTCAATGCCAGCCCTCAAAGCGATTTCCAGAGCATCAGCCCAAGCTACTTTGAAGATAGCAATAATGGAAACCCATTGTGGGAGCCTCTTTGGACATGA 588 51.87 MEGTDTFTTVSSTPLSQSPSSSPPPSPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFAIAHRVFGASNIIKFVQDLPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKSQAELVNMQCQQANLMAFVCRELAHSHHQSFDDFNASPQSDFQSISPSYFEDSNNGNPLWEPLWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7832793 7834772 + Hsped.08g08620.1 Hepe08g0862 576834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0862 195 Coils Coil 114 141 - -
Hepe08g0862 195 MobiDBLite consensus disorder prediction 1 17 - -
Hepe08g0862 195 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Hepe08g0862 195 MobiDBLite consensus disorder prediction 1 30 - -
Hepe08g0862 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 165 - -
Hepe08g0862 195 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0862 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0862 Hepe-Chr8:7832793 Hepe09g0225 Hepe-Chr9:1949857 1.67e-34 dispersed
Hepe01g0884 Hepe-Chr1:73034843 Hepe08g0862 Hepe-Chr8:7832793 3.47e-62 transposed
Hepe10g1091 Hepe-Chr10:43381375 Hepe08g0862 Hepe-Chr8:7832793 2.77e-23 wgd
Hepe02g2983 Hepe-Chr2:79051994 Hepe08g0862 Hepe-Chr8:7832793 5.73e-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g316 . . . . . Bpe08g01337 Bma14g00470 . . . . . . . . . Cpe20g00754 . . . . . . . . . . . . . . . . . Cone11ag1283 Lsi02g01442 Csa06g01169 Chy11g01314 . . . . . . . . . Sed05g2881 . Cmo20g00502 . Cma20g00467 . Car20g00407 . . Bhi10g00583 Tan05g0284 Cmetu11g0670 . Hepe08g0862 . . Cla03g00230 Cam03g0244 Cec03g0239 Cco03g0247 Clacu03g0243 Cmu03g0858 Cre03g0550 . Csa01g01304 Chy12g00863 Cme12g00335
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g2048 . 1 215 AS2 family AT1G65620 69.1 3.0e-72 268.5
Hepe10g0823 . 2 110 AS2 family AT1G65620 80.7 3.3e-47 185.3
Hepe09g0225 . 9 119 AS2 family AT1G65620 74.8 5.3e-45 177.9
Hepe02g1786 . 3 172 AS2 family AT1G65620 52.3 1.3e-43 173.3
Hepe02g3080 . 4 113 AS2 family AT1G65620 66.4 5.1e-40 161.4
Hepe07g2205 . 1 117 AS2 family AT1G65620 68.4 5.1e-40 161.4
Hepe10g0823 . 1 130 AS2 family AT5G66870 81.5 3.3e-57 219.2
Hepe08g2048 . 4 112 AS2 family AT5G66870 77.1 9.2e-44 174.5
Hepe09g0225 . 7 119 AS2 family AT5G66870 69.0 4.7e-40 162.2
Hepe02g1786 . 7 113 AS2 family AT5G66870 68.2 3.1e-39 159.5
Hepe02g3080 . 7 118 AS2 family AT5G66870 60.7 6.4e-37 151.8
Hepe07g2205 . 13 117 AS2 family AT5G66870 67.6 1.4e-36 150.6
Hepe10g0823 . 4 118 AS2 family AT2G23660 69.6 4.1e-44 175.6
Hepe08g2048 . 6 112 AS2 family AT2G23660 69.2 8.0e-40 161.4
Hepe09g0225 . 14 119 AS2 family AT2G23660 66.0 1.8e-39 160.2
Hepe07g2205 . 13 129 AS2 family AT2G23660 61.5 1.7e-37 153.7
Hepe02g1786 . 7 123 AS2 family AT2G23660 58.1 2.2e-37 153.3
Hepe02g1786 . 4 114 AS2 family AT3G27650 84.7 2.1e-52 202.2
Hepe02g3080 . 4 119 AS2 family AT3G27650 81.0 2.1e-52 202.2
Hepe09g0225 . 10 120 AS2 family AT3G27650 79.3 7.0e-48 187.2
Hepe07g2205 . 8 118 AS2 family AT3G27650 71.2 7.5e-42 167.2
Hepe08g2048 . 3 112 AS2 family AT3G27650 68.2 7.5e-42 167.2
Hepe10g0823 . 4 112 AS2 family AT3G27650 67.0 9.2e-40 160.2
Hepe09g0225 . 9 119 AS2 family AT5G63090 93.7 4.3e-57 218.0
Hepe02g1786 . 2 125 AS2 family AT5G63090 78.2 5.5e-52 201.1
Hepe07g2205 . 1 127 AS2 family AT5G63090 72.4 1.6e-48 189.5
Hepe02g3080 . 8 119 AS2 family AT5G63090 80.7 2.2e-48 189.1
Hepe08g2048 . 3 122 AS2 family AT5G63090 70.8 1.7e-45 179.5
Hepe10g0823 . 2 110 AS2 family AT5G63090 69.7 3.7e-40 161.8
Hepe08g0630 . 12 115 AS2 family AT5G63090 68.3 1.5e-38 156.4
Hepe01g0685 . 4 106 AS2 family AT5G63090 68.9 6.5e-37 151.0
Hepe01g0685 . 3 135 AS2 family AT2G30130 79.7 1.2e-54 209.9
Hepe08g0703 . 2 135 AS2 family AT2G30130 70.1 5.3e-50 194.5
Hepe08g0630 . 12 127 AS2 family AT2G30130 73.3 3.0e-45 178.7
Hepe07g1643 . 140 253 AS2 family AT2G30130 69.3 3.5e-41 165.2
Hepe01g0656 . 49 151 AS2 family AT2G30130 71.8 2.1e-38 156.0
Hepe09g0225 . 14 117 AS2 family AT2G30130 68.3 1.4e-37 153.3
Hepe08g2048 . 7 109 AS2 family AT2G30130 67.0 8.8e-37 150.6
Hepe02g1786 . 8 111 AS2 family AT2G30130 65.4 1.2e-36 150.2
Hepe07g1643 . 140 294 AS2 family AT1G31320 76.4 4.4e-64 241.1
Hepe08g0630 . 1 165 AS2 family AT1G31320 73.1 1.7e-63 239.2
Hepe01g0685 . 2 121 AS2 family AT1G31320 69.2 3.9e-44 174.9
Hepe08g0703 . 6 119 AS2 family AT1G31320 67.5 3.1e-41 165.2
Hepe01g0656 . 49 158 AS2 family AT1G31320 65.5 4.2e-38 154.8
Hepe09g0225 . 15 126 AS2 family AT1G31320 62.5 1.0e-36 150.2
Hepe02g2983 . 12 141 AS2 family AT2G28500 63.4 2.9e-42 169.1
Hepe01g0884 . 40 131 AS2 family AT2G28500 87.0 4.9e-42 168.3
Hepe08g0862 . 31 123 AS2 family AT2G28500 83.9 4.2e-41 165.2
Hepe01g0685 . 5 113 AS2 family AT2G28500 66.1 4.8e-37 151.8
Hepe08g0630 . 11 120 AS2 family AT2G28500 66.4 1.1e-36 150.6
Hepe08g0862 . 31 195 AS2 family AT1G07900 64.9 3.3e-44 175.3
Hepe01g0884 . 40 194 AS2 family AT1G07900 68.1 9.6e-44 173.7
Hepe02g2983 . 6 176 AS2 family AT1G07900 50.3 6.2e-43 171.0
Hepe08g0630 . 1 165 AS2 family AT1G16530 58.6 3.3e-48 188.3
Hepe07g1643 . 140 294 AS2 family AT1G16530 55.3 9.5e-40 160.2
Hepe08g0703 . 2 143 AS2 family AT1G16530 55.5 4.0e-38 154.8
Hepe01g0685 . 5 121 AS2 family AT1G16530 63.9 1.5e-37 152.9
Hepe01g0656 . 1 163 AS2 family AT2G30340 67.3 7.4e-58 221.1
Hepe02g3287 . 12 157 AS2 family AT2G30340 72.5 3.4e-55 212.2
Hepe08g0630 . 9 120 AS2 family AT2G30340 60.7 1.2e-36 150.6
Hepe01g0656 . 32 183 AS2 family AT2G40470 76.3 4.9e-59 224.6
Hepe02g3287 . 42 163 AS2 family AT2G40470 87.3 4.2e-58 221.5
Hepe08g0630 . 9 120 AS2 family AT2G40470 66.1 2.3e-40 162.5
Hepe07g1643 . 140 249 AS2 family AT2G40470 63.6 3.1e-37 152.1
Hepe02g3306 . 6 117 AS2 family AT3G11090 81.3 4.7e-47 184.5
Hepe06g1935 . 1 113 AS2 family AT2G42440 80.5 9.7e-49 190.7
Hepe03g2103 . 5 127 AS2 family AT2G42440 67.2 1.4e-42 170.2
Hepe06g1936 . 18 129 AS2 family AT2G42440 68.8 1.6e-38 156.8
Hepe03g0462 . 23 140 AS2 family AT2G42440 59.8 2.6e-38 156.0
Hepe06g1935 . 4 113 AS2 family AT3G58190 85.5 2.4e-51 199.1
Hepe03g2103 . 4 137 AS2 family AT3G58190 71.0 6.6e-49 191.0
Hepe03g0462 . 23 126 AS2 family AT3G58190 73.1 6.7e-41 164.5
Hepe06g1936 . 15 129 AS2 family AT3G58190 68.7 2.8e-39 159.1
Hepe05g0787 . 45 162 AS2 family AT3G58190 62.7 1.2e-37 153.7
Hepe01g0778 . 6 128 AS2 family AT3G58190 61.0 2.6e-37 152.5
Hepe06g1935 . 1 157 AS2 family AT2G31310 52.9 1.4e-39 159.8
Hepe06g1936 . 12 228 AS2 family AT2G42430 50.2 4.4e-49 191.8
Hepe03g0462 . 16 130 AS2 family AT2G42430 72.4 3.0e-42 169.1
Hepe06g1935 . 3 118 AS2 family AT2G42430 69.0 1.2e-41 167.2
Hepe05g0787 . 44 160 AS2 family AT2G42430 64.1 3.5e-38 155.6
Hepe05g1877 . 9 121 AS2 family AT2G42430 64.6 1.3e-37 153.7
Hepe03g2103 . 9 112 AS2 family AT2G42430 70.2 5.0e-37 151.8
Hepe03g0462 . 28 223 AS2 family AT4G00220 56.6 2.3e-52 202.6
Hepe05g1877 . 19 166 AS2 family AT4G00220 55.8 7.4e-43 171.0
Hepe03g0460 . 32 215 AS2 family AT4G00220 51.0 2.5e-38 156.0
Hepe03g0462 . 28 229 AS2 family AT2G45420 63.7 5.3e-61 231.5
Hepe05g1877 . 19 128 AS2 family AT2G45420 77.3 5.2e-48 188.3
Hepe05g0787 . 45 151 AS2 family AT2G45420 75.7 4.2e-42 168.7
Hepe06g1936 . 23 125 AS2 family AT2G45420 76.7 1.6e-41 166.8
Hepe06g1935 . 7 109 AS2 family AT2G45420 72.8 4.0e-40 162.2
Hepe03g0460 . 32 121 AS2 family AT2G45420 81.1 5.2e-40 161.8
Hepe03g2103 . 10 116 AS2 family AT2G45420 68.2 2.0e-39 159.8
Hepe05g0787 . 45 158 AS2 family AT3G03760 86.8 5.2e-51 198.4
Hepe03g0462 . 5 129 AS2 family AT3G03760 70.4 4.9e-41 165.2
Hepe06g1935 . 2 111 AS2 family AT3G03760 69.1 6.6e-38 154.8
Hepe06g1936 . 18 136 AS2 family AT3G03760 63.9 1.9e-37 153.3
Hepe05g1877 . 11 123 AS2 family AT3G03760 67.3 4.3e-37 152.1
Hepe03g0462 . 26 137 AS2 family AT4G00210 74.3 1.0e-44 177.2
Hepe05g1877 . 18 128 AS2 family AT4G00210 65.8 2.0e-40 162.9
Hepe06g1935 . 2 107 AS2 family AT4G00210 67.9 1.4e-38 156.8
Hepe06g1936 . 13 125 AS2 family AT4G00210 66.4 1.8e-38 156.4
Hepe05g0787 . 45 197 AS2 family AT4G00210 53.6 5.3e-38 154.8
Hepe03g2103 . 10 114 AS2 family AT4G00210 65.7 2.0e-37 152.9
Hepe03g0460 . 30 229 AS2 family AT2G45410 51.7 2.7e-46 182.2
Hepe05g1877 . 12 122 AS2 family AT2G45410 71.2 6.7e-45 177.6
Hepe06g1935 . 3 102 AS2 family AT2G45410 68.0 2.3e-37 152.5
Hepe06g1936 . 19 125 AS2 family AT2G45410 65.4 1.1e-36 150.2
Hepe01g0778 . 7 117 AS2 family AT5G06080 72.1 2.0e-43 172.6
Hepe03g0462 . 26 129 AS2 family AT5G06080 67.3 8.1e-37 150.6
Hepe03g1460 . 34 140 AS2 family AT3G13850 75.7 2.5e-42 169.5
Hepe02g0980 . 1 180 AS2 family AT1G68510 62.2 1.1e-60 230.3
Hepe09g0340 . 1 156 AS2 family AT1G68510 61.2 1.4e-52 203.4
Hepe01g1189 . 1 179 AS2 family AT1G68510 54.3 4.2e-49 191.8
Hepe04g1305 . 1 104 AS2 family AT1G68510 63.5 2.3e-39 159.5
Hepe02g0980 . 1 138 AS2 family AT1G67100 82.3 1.1e-65 246.9
Hepe09g0340 . 1 135 AS2 family AT1G67100 72.3 1.7e-58 223.0
Hepe01g1189 . 1 133 AS2 family AT1G67100 66.7 1.7e-50 196.4
Hepe04g1305 . 1 110 AS2 family AT1G67100 66.4 3.1e-44 175.6
Hepe01g1821 . 1 110 AS2 family AT1G67100 64.5 1.0e-39 160.6
Hepe02g0980 . 1 297 AS2 family AT3G02550 56.6 2.0e-79 292.7
Hepe09g0340 . 1 158 AS2 family AT3G02550 66.5 1.7e-59 226.5
Hepe01g1189 . 1 140 AS2 family AT3G02550 64.1 3.6e-49 192.2
Hepe04g1305 . 1 110 AS2 family AT3G02550 64.5 1.5e-39 160.2
Hepe01g1821 . 1 123 AS2 family AT3G02550 57.6 7.0e-37 151.4
Hepe04g1305 . 1 231 AS2 family AT5G67420 60.3 1.9e-71 266.2
Hepe01g1821 . 1 117 AS2 family AT5G67420 70.1 9.3e-47 184.1
Hepe02g0980 . 3 122 AS2 family AT5G67420 66.7 1.0e-45 180.6
Hepe09g0340 . 3 112 AS2 family AT5G67420 60.9 1.1e-39 160.6
Hepe01g1189 . 3 106 AS2 family AT5G67420 63.5 3.5e-38 155.6
Hepe04g1305 . 1 209 AS2 family AT3G49940 63.9 1.0e-69 260.4
Hepe01g1821 . 1 127 AS2 family AT3G49940 69.5 6.4e-48 188.0
Hepe09g0340 . 3 112 AS2 family AT3G49940 60.0 5.4e-39 158.3
Hepe01g1189 . 3 106 AS2 family AT3G49940 65.4 2.7e-38 156.0
Hepe04g1305 . 1 231 AS2 family AT4G37540 56.2 1.1e-68 256.9
Hepe09g0340 . 3 113 AS2 family AT4G37540 61.3 4.0e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000542 3 3 2 4 5 3 5 3 3 3 3 3 5 4 3 5 3 4 5 3 4 5 3 3 4 4 2 3 4 5 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56163 PF03195 LOB 2.20E-40 No_clan Hepe TF