Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0862 ATGGAAGGCACTGACACATTCACCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTCCTCCTCCGTCTCCCCCGCCGCCCGTCGTTCTCAGTCCTTGCGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCCGAGCGATGTGTATTGGCGCCCTATTTCCCGCCCACTGATCCGGCAAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAATTCGTGCAGGATCTGCCTGAATCTCAAAGGGCGGATGCAGTGAGCAGTTTGGTATACGAAGCAAGTGCGAGGATCAGAGACCCTGTTTACGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTGAATGAGCTTCAAGCGCAGCTAGCCAAGTCCCAGGCGGAGCTCGTCAACATGCAATGCCAACAAGCCAATCTCATGGCCTTCGTTTGCAGGGAATTAGCTCACTCTCACCATCAGTCTTTTGATGATTTCAATGCCAGCCCTCAAAGCGATTTCCAGAGCATCAGCCCAAGCTACTTTGAAGATAGCAATAATGGAAACCCATTGTGGGAGCCTCTTTGGACATGA 588 51.87 MEGTDTFTTVSSTPLSQSPSSSPPPSPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFAIAHRVFGASNIIKFVQDLPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKSQAELVNMQCQQANLMAFVCRELAHSHHQSFDDFNASPQSDFQSISPSYFEDSNNGNPLWEPLWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7832793 7834772 + Hsped.08g08620.1 Hepe08g0862 576834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0862 195 Coils Coil 114 141 - -
Hepe08g0862 195 MobiDBLite consensus disorder prediction 1 17 - -
Hepe08g0862 195 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Hepe08g0862 195 MobiDBLite consensus disorder prediction 1 30 - -
Hepe08g0862 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 165 - -
Hepe08g0862 195 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0862 Hepe-Chr8:7832793 Hepe09g0225 Hepe-Chr9:1949857 1.67e-34 dispersed
Hepe01g0884 Hepe-Chr1:73034843 Hepe08g0862 Hepe-Chr8:7832793 3.47e-62 transposed
Hepe10g1091 Hepe-Chr10:43381375 Hepe08g0862 Hepe-Chr8:7832793 2.77e-23 wgd
Hepe02g2983 Hepe-Chr2:79051994 Hepe08g0862 Hepe-Chr8:7832793 5.73e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56163 PF03195 LOB 2.20E-40 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0862 - - - 0.0