Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0874 ATGGAAATTGATCTGAACCAAACTGCCAGTGAGGTGGGGAAGAATGCATATTGCAATGGAAATTGCGAAGAGGAGGGTCGTTGCAATTGTTGTTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACTCCTGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCTATGGAGATGCGCACTTTTGACCTCCAGCCACAGATCATCTGCAAGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTCCTTCCCTTGCCAGAGTTATTAGGCACTGCTCTAGAGGGCAAAGAGCTGGAGGAATTGGCTTTGAATGGAGCTGATGCAGATGGGAGTGGAGGCTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCCTCTGACACCAGCACTCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGCTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGTGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTTACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTCGGCAACCAAACTTCTTGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTGAAGAGCGTCAATAATCCAGTGACCGTAGGCACGAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTATCGGAATTGGTGACATGGATCCCTTTCGATGGCCGAATTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTCTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAATGTTCAGTCTTCTCCAAGGTTGAAAAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGAGGCGGTTTTATGGACTTTGAGGATTCGATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTCTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTCCACTGGAGTTTGAGGTGCGATCTTCTGCACAACAAAATCAAGCGCCGGGTGGAGTTGAAAAGCTTAATATAGGTGATTATGTAAAGGTTCATAGGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAACCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATGTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAGTTTTTATCACATGGCGCCAAATGGCGCCCAAAACATGTATTTCCCCCGTAGTGAAATTTACAGTACTGGCCAAGCCGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCAACTGCTGTTGATGCTAGTGTTATCAGGACTAAAATGGAAAGGGCTAATCGTTCACTCGATCGGGAGTCTCTACATTTAGTTTCTGCTCCAACAACTTCAGGGTCGAATACGAGGAATTCAAAAGATGAGAATGTGAATGAGAACTCAACTGGCTGCAAACTTTTTGGTTTTTCCTTGACTACGGAAACTGCTACAAACATGCAAAGTTCGGGGAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTAGTGGGAAGAGCTATTGATCTCTCTAGACTGAATGGCTATACTGATCTGATTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGACTCCTAAAAGATCCTGATAAAGGATGGCGAGTACTGTACACTGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCGTGGCATGACTTCTGTGACGCCGTTTCGAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGTGTCAAAATCCTCTTCAGTGGGCCAACCTGATTCATCTCCAACAGTAGTAAGATTTTAA 2412 44.4 MEIDLNQTASEVGKNAYCNGNCEEEGRCNCCLSSSTSSCSSNSSPTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQIICKVINVHLLANKENDEVYTQLTLLPLPELLGTALEGKELEELALNGADADGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQTSCANDLARVVKAISTKSMFDVFYNPRAYHAQFVISCQKYVKSVNNPVTVGTRFKMRFEMDDSPERRFNGVVIGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLNVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGLVSPFYGCDTAKRPLEFEVRSSAQQNQAPGGVEKLNIGDYVKVHRNSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNVSDNSFNTFQSPNSSFYHMAPNGAQNMYFPRSEIYSTGQAAMMRSNDSNFPRENALFNPTAVDASVIRTKMERANRSLDRESLHLVSAPTTSGSNTRNSKDENVNENSTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEVSKSSSVGQPDSSPTVVRF 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7925941 7933068 - Hsped.08g08740.1 Hepe08g0874 576846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0874 803 SMART B3_2 170 272 IPR003340 GO:0003677(InterPro)
Hepe08g0874 803 ProSiteProfiles PB1 domain profile. 675 759 IPR053793 -
Hepe08g0874 803 Pfam AUX/IAA family 666 760 IPR033389 -
Hepe08g0874 803 ProSiteProfiles B3 DNA-binding domain profile. 170 272 IPR003340 GO:0003677(InterPro)
Hepe08g0874 803 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 765 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g0874 803 MobiDBLite consensus disorder prediction 629 649 - -
Hepe08g0874 803 FunFam Auxin response factor 333 403 - -
Hepe08g0874 803 SUPERFAMILY DNA-binding pseudobarrel domain 163 279 IPR015300 -
Hepe08g0874 803 Pfam B3 DNA binding domain 170 271 IPR003340 GO:0003677(InterPro)
Hepe08g0874 803 CDD B3_DNA 168 270 IPR003340 GO:0003677(InterPro)
Hepe08g0874 803 SUPERFAMILY CAD & PB1 domains 677 754 - -
Hepe08g0874 803 Gene3D - 168 272 IPR015300 -
Hepe08g0874 803 Gene3D - 671 764 - -
Hepe08g0874 803 Gene3D - 334 403 - -
Hepe08g0874 803 FunFam Auxin response factor 168 272 - -
Hepe08g0874 803 Pfam Auxin response factor 297 377 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g0874 803 FunFam Auxin response factor 670 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1883 Hepe-Chr4:73763442 Hepe08g0874 Hepe-Chr8:7925941 2.34e-143 dispersed
Hepe08g0874 Hepe-Chr8:7925941 Hepe08g2709 Hepe-Chr8:69072305 2.31e-101 dispersed
Hepe01g0083 Hepe-Chr1:9012192 Hepe08g0874 Hepe-Chr8:7925941 1.95e-143 transposed
Hepe03g0670 Hepe-Chr3:15586492 Hepe08g0874 Hepe-Chr8:7925941 6.11e-139 transposed
Hepe06g1463 Hepe-Chr6:65217889 Hepe08g0874 Hepe-Chr8:7925941 9.77e-127 transposed
Hepe07g0830 Hepe-Chr7:10325207 Hepe08g0874 Hepe-Chr8:7925941 3.16e-134 transposed
Hepe09g0011 Hepe-Chr9:120331 Hepe08g0874 Hepe-Chr8:7925941 1.65e-144 transposed
Hepe04g0938 Hepe-Chr4:63646112 Hepe08g0874 Hepe-Chr8:7925941 4.79e-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56164 PF02309 AUX_IAA 7.20E-08 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0874 K14486 - csv:101212503 1462.59