Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0890 ATGGCCATGGCTATAGCTCATCACAGGGAGAGTAGTACTGGGAGCATAACCAGGCATCTTGACAGCTCTGGAAAGTATGTTCGATACACATCAGAGCAGGTTGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGAAGGCAGCAGCTCATTCGGGAGTGCCCAATTCTTTCTAACATAGAGCCCAAGCAGATCAAAGTTTGGTTTCAGAATCGAAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTGAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTTTCGCAATTGGTGTGTGAAAATGGGTTTATGCGCCAGCAATTGCATACAGTGCCAGCAACAACCACCGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAGCCCTCTCGGAGAGATGCTAATAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATTTTTGCCATTTCACAAAGTTGCGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCCTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTCGAGGTTTTTACCATGTTTCCAGCCGGAAATGGTGGGACAATTGAACTTGTGTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATACACAATAACTTTGGAAAACGGAAGCCTTGTGGTTTGCGAGAGATCTCTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCAGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGCGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAGAGTAGTGGCTCAGAAGATGACTATAGCAGCACTGCGGTACGTTAGGCAAATAGCTCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTCGGCCGGCAACCTGCTGTTTTGCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCATTGATTAATTGTGAAGGCGCTGAGGATGTGGTACTTGCCGTGAATTCTACGAAAAATTTGGGCACAACATCTAACCCTGCTAACTCCTTAACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGGGAACACCGGTCAGAGTGGGCTGATTTCAACATTGATGCTTACACTGCAGCAACCCTTAAAGCCAATTCATACGCATATCCAGGGATGAGGCCCACAAGGTTTACCGGTAGTCAAATCATCATGCCACTCGGCCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGATATTCATCTTCTTCAGATATGTAGTGGAATTGATGAGAATGCTGTAGGAGCCTGTTCAGAACTCGTTTTTGCCCCAATTGATGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGGTAAAGGTACATTGACTAGTCAACGGACTCTGGATCTAACATCGAGCCTTGAAGTGGGTTCTGGAACTAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGCACTAGATCAGTGTTAACTATTGCATTCCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTAGCGAACATGGCACACCAGTACGTACGCAGCGTCATTTCCTCGGTGCAGAGAGTTGCGTTGGCCATATCTCCATCTGGGGGTAATCCAGCACTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTACCAATTGGGAACGGAGTTGATCAGGTCAGATTCCTTGGAAAGTGATTCCCTGTTGAAAGATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCCTTGAAGTCGCTGCCTGTTTTCATGTTTGCAAACCAAGCTGGGCTCGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATTTTCGACGAGGCGGGTCGCAAAGCTTTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGAGGAATCTGTGCATCAACAATGGGGCGACACGTTTCATACGAACAAGCCATTGCATGGAAAGTCCTCGAGGCAGACGAGACGACAGTCCATTGCCTTGCCTTCTCTTTCATAAACTGGTCTTTTGTTTGA 2532 46.88 MAMAIAHHRESSTGSITRHLDSSGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTVPATTTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSRVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYTAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDGKGTLTSQRTLDLTSSLEVGSGTSNTAGDASSSQSTRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVALAISPSGGNPALGPKLSPGSPEALTLAHWICKSYSYQLGTELIRSDSLESDSLLKDLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8076955 8082922 + Hsped.08g08900.1 Hepe08g0890 576862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0890 843 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Hepe08g0890 843 Coils Coil 80 121 - -
Hepe08g0890 843 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Hepe08g0890 843 Gene3D - 200 378 IPR023393 -
Hepe08g0890 843 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289(InterPro)
Hepe08g0890 843 Pfam START domain 164 372 IPR002913 GO:0008289(InterPro)
Hepe08g0890 843 SMART START_1 163 373 IPR002913 GO:0008289(InterPro)
Hepe08g0890 843 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Hepe08g0890 843 SUPERFAMILY Bet v1-like 411 599 - -
Hepe08g0890 843 CDD bZIP 77 116 - -
Hepe08g0890 843 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Hepe08g0890 843 Gene3D - 19 91 - -
Hepe08g0890 843 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Hepe08g0890 843 SUPERFAMILY Bet v1-like 163 375 - -
Hepe08g0890 843 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Hepe08g0890 843 CDD START_ArGLABRA2_like 158 374 - -
Hepe08g0890 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 843 IPR044830 GO:0003700(InterPro)
Hepe08g0890 843 Pfam MEKHLA domain 699 842 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2047 Hepe-Chr4:75327603 Hepe08g0890 Hepe-Chr8:8076955 0.0 dispersed
Hepe07g1716 Hepe-Chr7:59032528 Hepe08g0890 Hepe-Chr8:8076955 0.0 dispersed
Hepe08g0890 Hepe-Chr8:8076955 HepeContig66g0233 Hepe-ChrContig66:18244698 0.0 transposed
Hepe08g0890 Hepe-Chr8:8076955 Hepe10g0905 Hepe-Chr10:29183232 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56166 PF01852 START 3.40E-46 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0890 K09338 - csv:101215773 1606.27