Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0894 ATGAAAGAAGCAGAGAAGAACTTAGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCTCTTATTCCTTCCCGAGTGCTTGCCGTTAAGTTCTTGGCCGACCATGAAACGGATGAAGTTTATGCCAATGTGAGATTGGTTCCACTCGCCAACAACGACCTCAATTTTGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCGGAGAGTAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCGGAGACCATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACCGTGATTGCCAAGGATGTTCACGGTGAGGTTTGGAAGTTCCGGCATATTTATAGAGGGACGCCTCGCCGGCATTTGTTAACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGTGATTCGATTGTTTTTCTTAGATCCAAAAATGGTGACCTCTGTGTCGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCTGCCGATCATCCATATGGCTGGAATCCCGGCGGAGGAAATTGCATCCCGCCTTATGGTGGATTGACGATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTGTTTGAGTTCTAATGGTGGTGGCGGGAATTTGAGGGGAAAAGGCAAAGTGAGGCCGGAATCAGTGATTGAAGCGGCGGCGCTTGCGGCGAGTGGGCAGCCGTTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTGCGAGCCGCGATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCGAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGCGTTAGCCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCGCCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACAGCCAATTCCCACTGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGATTTCCATCTCAACAACAAACTGCAGTTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCGAATAGATCAGTTACAGACCATAGAGACAGCAGCAGTCAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAACATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCGGTGACATTCGCTCACCTCGGACGGAGAAAAGCTCCTTAGATGTGAATCTGGAGAGAGTGAAGTTTCTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAATAAATCACCAGGAGCGGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCCGAAGATGTGGGCCGGACGCTTAACCTTTCGGTCATTGGCTCATATGAAGAACTATACAGGAGGCTCGCGAACATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGATAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACGATTCTAACAGACTCGGGGTCCGACAAGATCGGAAGGACATTGATGGATGGAAGAATGCGAAGTGCTGAAAATGGATTAGATGCCTCAAACAAGACAGGTCCCGGCCCCTTGAGCATATTTGCCTAG 2157 49.42 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPSRVLAVKFLADHETDEVYANVRLVPLANNDLNFEEEGGFGSNGSESNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGCLSSNGGGGNLRGKGKVRPESVIEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPRTEKSSLDVNLERVKFLSDGSGSTFKQQISPNKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKIGRTLMDGRMRSAENGLDASNKTGPGPLSIFA 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8125352 8129105 - Hsped.08g08940.1 Hepe08g0894 576866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0894 718 FunFam Auxin response factor 110 214 - -
Hepe08g0894 718 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Hepe08g0894 718 MobiDBLite consensus disorder prediction 492 507 - -
Hepe08g0894 718 MobiDBLite consensus disorder prediction 487 516 - -
Hepe08g0894 718 Gene3D - 603 687 - -
Hepe08g0894 718 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
Hepe08g0894 718 FunFam Auxin response factor 319 392 - -
Hepe08g0894 718 ProSiteProfiles PB1 domain profile. 603 683 IPR053793 -
Hepe08g0894 718 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Hepe08g0894 718 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 687 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g0894 718 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Hepe08g0894 718 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Hepe08g0894 718 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe08g0894 718 Gene3D - 319 392 - -
Hepe08g0894 718 Gene3D - 110 214 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0938 Hepe-Chr4:63646112 Hepe08g0894 Hepe-Chr8:8125352 8.16e-311 dispersed
Hepe08g0894 Hepe-Chr8:8125352 Hepe10g0526 Hepe-Chr10:6080792 5.59e-107 dispersed
Hepe02g2954 Hepe-Chr2:78820392 Hepe08g0894 Hepe-Chr8:8125352 5.99e-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56167 PF02362 B3 1.40E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0894 K14486 - csv:101216500 1371.3