Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0898 ATGAGATTGAATCCATTAGAACTGCAGCCAAAGCCAAAGGTTTCATTTGGGAAGATCTTTATGGCTTATGGTAGTTCTAGATCTGTAAGATTCCAAGATGATCTTGAAACATCTGCCCTGCCTACAATCAATGGCGGTGGCGTGACGAAGATCATATACAACATTGATGGCACACAAATACCTGAATCAAGCGGAAAGAGAACTGAGGTTTCTGGGAAGTTTGGAAGATCCTTGCGAGCTAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAGAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATCTTTTTAGTAGCTTGTTTAGTCTCTTTGTTTGTAGACCCGCTTTTCTTTTACTTGCCTGTGGTCCGGGATGAAGTGTGCATCGATATAGGAGTAGGTCTCGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCATCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTATTGCATGGTTTCTGGATCGATTTCATTGCAGCCCTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCTACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGATCCTGCTGGTACCTTCTTTCAATCGAGCGACAAGAAGCATGCTGGAGAAAACTTTGTACGCTTGATGAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCATGGTTTAAGACGAGCAACATTACAAATTCGTGCAATCCAAATGATCCCTTTTATCAATTTGGTATATACGGTGATGCAATAACTTTTCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTGAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATTATATTTGCCATAATTATGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGCAATATGCAGAAATACCTCCAATCGACGACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAGTCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAATCCCTGCTTAGAAGTCTTCCATTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTCGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATTTCTCGTGCGAGAAGGCGACCCGGTCAATGAAATGCTATTCATAATCAGAGGTCATCTCGATTCGTACACCACTAATGGTGGTAGAACCGGATTTTTCAACTCCTGTCGTATCGGCCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGTCCCAGTGTTGTACTTCCTTCTTCCACTCGCACGGTCAAAGCCATCTCTGAAGTAGAAGCATTTGCTCTCATAGCAGATGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTTCGATTCTACTCGCATCAGTGGCGAACATGGGCCGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAAGAAAGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACCATGCTCGAGTCCTCACTTTCACCACCAACTGCATCAAACTTGGATGCGCGTTCAGGAAGCACTAGAAGGGGAATGAATAAGCGTTGTGTGTCCGATGCTGGGGTTGTAAGCTCGTTACAGAAGCCGGAAGAGCCCGACTTCTCCATTGTTGAGGAATGA 2163 44.15 MRLNPLELQPKPKVSFGKIFMAYGSSRSVRFQDDLETSALPTINGGGVTKIIYNIDGTQIPESSGKRTEVSGKFGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLLHGFWIDFIAALPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGSCWYLLSIERQEACWRKLCTLDESCKDGFFDCHKVDDPQRDSWFKTSNITNSCNPNDPFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIMATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEESLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIADDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATMLESSLSPPTASNLDARSGSTRRGMNKRCVSDAGVVSSLQKPEEPDFSIVEE 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8194439 8198913 - Hsped.08g08980.1 Hepe08g0898 576870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0898 720 FunFam Cyclic nucleotide-gated ion channel 1 498 616 - -
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 164 173 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 281 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 395 406 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 463 470 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 369 386 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 PRINTS EAG/ELK/ERG potassium channel family signature 413 422 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe08g0898 720 SMART cnmp_10 500 631 IPR000595 -
Hepe08g0898 720 Gene3D Helix hairpin bin 427 491 - -
Hepe08g0898 720 Pfam Cyclic nucleotide-binding domain 523 583 IPR000595 -
Hepe08g0898 720 CDD CAP_ED 500 631 IPR000595 -
Hepe08g0898 720 Gene3D - 102 424 - -
Hepe08g0898 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 665 - -
Hepe08g0898 720 MobiDBLite consensus disorder prediction 669 688 - -
Hepe08g0898 720 Pfam Ion transport protein 108 427 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0898 720 SUPERFAMILY cAMP-binding domain-like 430 625 IPR018490 -
Hepe08g0898 720 MobiDBLite consensus disorder prediction 669 695 - -
Hepe08g0898 720 FunFam Cyclic nucleotide-gated ion channel 1 427 491 - -
Hepe08g0898 720 Gene3D Jelly Rolls 498 618 IPR014710 -
Hepe08g0898 720 SUPERFAMILY Voltage-gated potassium channels 100 422 - -
Hepe08g0898 720 ProSiteProfiles cAMP/cGMP binding motif profile. 500 597 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1860 Hepe-Chr2:28925007 Hepe08g0898 Hepe-Chr8:8194439 3.01e-241 dispersed
Hepe07g2555 Hepe-Chr7:69967263 Hepe08g0898 Hepe-Chr8:8194439 2.09e-125 dispersed
Hepe08g0898 Hepe-Chr8:8194439 Hepe09g0522 Hepe-Chr9:4885919 1.36e-258 dispersed
Hepe07g0288 Hepe-Chr7:2918098 Hepe08g0898 Hepe-Chr8:8194439 2.12e-115 transposed
Hepe07g1099 Hepe-Chr7:18441723 Hepe08g0898 Hepe-Chr8:8194439 1.48e-86 transposed
Hepe04g0941 Hepe-Chr4:63700715 Hepe08g0898 Hepe-Chr8:8194439 1.18e-297 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0898 K05391 - csv:101210775 1333.55