Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0926 | ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCGTCGCATTGCCTCTTCCCCATTTCAAGAATCTCATCTTCTCCAACAAACCTCCTTCTTTCAAACCCATCTTTCACAATTTCCTTTCCTCAATGTCTTCTTCTCGTCCTTCCGCTTTCGATGCTCTCATGTCCGGTGCTCGTGCTGCCGCCGCCGCCAAGAAGAAGCCTGTTAATCCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCTCCGAAACCTAGTTCTTCGCAGGTTCTGGAGTCAACGCCGCCTGTTGAATCGCAGGGCGGCAATCATGGTGGCTCTCATGTTGTCAAGTCCGAGACCGCTGTCGATTTGGGAGAAACCAAGTTGCGTCAAGATAATGGTGGCAGTCTTGGAATTAAGACGAGCGCGACTAATGTTCAAGAAAGAACTGCGAAATTGAAGGGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCCAAAAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCCTGTTTGTTTCTTTGTTTGGGTTTCGATATGATTTCTGAGGAGTCCAGTAGGATTACTATCACTGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGATGACTTGTTGGCCACTGTGTATCTTTTGGCGAACAAGATTGCTCCAGCTCACGAAGGGCTTGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCAAGCCGTTCATCACAATCCATGATGCGAAAGCCTGATGCTTTAACCATTATCAAAGTATTCGACACATTTCGGCTGCTTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTACGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTCGGGCAAGCAGCTGTGTATGCTGAAAAACACTCAACACCACCACCAAACATTCAATCTCCTCTAGAAGAGGCTTCTAAGATAGTAAAGCAGGTGTATTCTGTACTCCCAGTTTATGATAAACTTGTCCCTGCACTTCTTAGTGGTGGTGTGTGGGAGCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAGGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAGTTTACTTGTGAATACAAATATGACGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGACGTTGTTCTTATGGTATCGAGGATAAAGAACCCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTCTGCCTTTTCAGATTCTGAGTACACGAGCCCGCAAGAACGTGGCCGTGAGTGATATAAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTCGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTATGACTCATTTAAGGAAGAAACTGGATATTTTCAATTTGCCACAGCAATAATAACAAACGATCTTGAGGAAATACAAAAATTCCTCGATGCATCTGTTGATGGAAGTTGTGAGGGTTTAATTATCAAAACATTGAAGCGGGATGCTACTTATGAGCCTTCCAAGAGGTCACATAACTGGCTAAAATTGAAGAAGGATTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGGACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTACTAGTCTCCGTTCTAAAGTCATTCCCGAACCAAAGTCATATTATCGTTGTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGTCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCTGACAAGGGAATTTCTCTTCGATTTCCTCGTCTTGTTCGTGTAAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACACCCACCAAAACAATAAAGATGACAATGAAGACGACTGA | 2385 | 43.48 | MLSLRSCYYLRPVALPLPHFKNLIFSNKPPSFKPIFHNFLSSMSSSRPSAFDALMSGARAAAAAKKKPVNPSPKKRKALDSLDPPPPKPSSSQVLESTPPVESQGGNHGGSHVVKSETAVDLGETKLRQDNGGSLGIKTSATNVQERTAKLKGSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLLATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIIKVFDTFRLLAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAFGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSVLPVYDKLVPALLSGGVWELSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLMVSRIKNPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFKEETGYFQFATAIITNDLEEIQKFLDASVDGSCEGLIIKTLKRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSTSLRSKVIPEPKSYYRCGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHTHQNNKDDNEDD | 794 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8522685 | 8529774 | - | Hsped.08g09260.1 | Hepe08g0926 | 576898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0926 | 794 | Gene3D | - | 157 | 424 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | MobiDBLite | consensus disorder prediction | 760 | 794 | - | - | |
Hepe08g0926 | 794 | Gene3D | DNA ligase/mRNA capping enzyme | 451 | 576 | - | - | |
Hepe08g0926 | 794 | Pfam | ATP dependent DNA ligase domain | 422 | 626 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | FunFam | DNA ligase | 157 | 424 | - | - | |
Hepe08g0926 | 794 | CDD | Adenylation_DNA_ligase_I_Euk | 411 | 629 | - | - | |
Hepe08g0926 | 794 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 600 | 626 | IPR016059 | GO:0003909(InterPro) | |
Hepe08g0926 | 794 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 155 | 791 | IPR050191 | GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER) | |
Hepe08g0926 | 794 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 446 | 454 | IPR016059 | GO:0003909(InterPro) | |
Hepe08g0926 | 794 | CDD | OBF_DNA_ligase_I | 634 | 779 | - | - | |
Hepe08g0926 | 794 | Gene3D | - | 631 | 793 | IPR012340 | - | |
Hepe08g0926 | 794 | MobiDBLite | consensus disorder prediction | 62 | 113 | - | - | |
Hepe08g0926 | 794 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 528 | 664 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | FunFam | DNA ligase | 422 | 628 | - | - | |
Hepe08g0926 | 794 | Gene3D | - | 432 | 630 | - | - | |
Hepe08g0926 | 794 | MobiDBLite | consensus disorder prediction | 94 | 111 | - | - | |
Hepe08g0926 | 794 | SUPERFAMILY | Nucleic acid-binding proteins | 634 | 780 | IPR012340 | - | |
Hepe08g0926 | 794 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 414 | 632 | - | - | |
Hepe08g0926 | 794 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 162 | 413 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | Pfam | ATP dependent DNA ligase C terminal region | 651 | 762 | IPR012309 | GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | NCBIfam | ATP-dependent DNA ligase | 238 | 777 | IPR000977 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro) | |
Hepe08g0926 | 794 | Pfam | DNA ligase N terminus | 184 | 355 | IPR012308 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe08g0926 | 794 | FunFam | DNA ligase | 631 | 790 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0931 | Hepe-Chr2:11242134 | Hepe08g0926 | Hepe-Chr8:8522685 | 1.42e-159 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0926 | K10747 | - | csv:101213447 | 1386.7 |