Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0926 ATGCTTTCACTGCGTTCATGTTACTATCTACGCCCCGTCGCATTGCCTCTTCCCCATTTCAAGAATCTCATCTTCTCCAACAAACCTCCTTCTTTCAAACCCATCTTTCACAATTTCCTTTCCTCAATGTCTTCTTCTCGTCCTTCCGCTTTCGATGCTCTCATGTCCGGTGCTCGTGCTGCCGCCGCCGCCAAGAAGAAGCCTGTTAATCCTTCTCCCAAGAAGCGTAAAGCCCTAGATTCTTTAGACCCTCCTCCTCCGAAACCTAGTTCTTCGCAGGTTCTGGAGTCAACGCCGCCTGTTGAATCGCAGGGCGGCAATCATGGTGGCTCTCATGTTGTCAAGTCCGAGACCGCTGTCGATTTGGGAGAAACCAAGTTGCGTCAAGATAATGGTGGCAGTCTTGGAATTAAGACGAGCGCGACTAATGTTCAAGAAAGAACTGCGAAATTGAAGGGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCCAAAAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCCTGTTTGTTTCTTTGTTTGGGTTTCGATATGATTTCTGAGGAGTCCAGTAGGATTACTATCACTGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGATGACTTGTTGGCCACTGTGTATCTTTTGGCGAACAAGATTGCTCCAGCTCACGAAGGGCTTGAGTTGGGTATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTTAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCAAGCCGTTCATCACAATCCATGATGCGAAAGCCTGATGCTTTAACCATTATCAAAGTATTCGACACATTTCGGCTGCTTGCTAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGCGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTACGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTCGGGCAAGCAGCTGTGTATGCTGAAAAACACTCAACACCACCACCAAACATTCAATCTCCTCTAGAAGAGGCTTCTAAGATAGTAAAGCAGGTGTATTCTGTACTCCCAGTTTATGATAAACTTGTCCCTGCACTTCTTAGTGGTGGTGTGTGGGAGCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAGGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAGTTTACTTGTGAATACAAATATGACGGGGAACGTGCCCAGATTCATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGACGTTGTTCTTATGGTATCGAGGATAAAGAACCCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAGAAGATTCTGCCTTTTCAGATTCTGAGTACACGAGCCCGCAAGAACGTGGCCGTGAGTGATATAAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTCGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTATGACTCATTTAAGGAAGAAACTGGATATTTTCAATTTGCCACAGCAATAATAACAAACGATCTTGAGGAAATACAAAAATTCCTCGATGCATCTGTTGATGGAAGTTGTGAGGGTTTAATTATCAAAACATTGAAGCGGGATGCTACTTATGAGCCTTCCAAGAGGTCACATAACTGGCTAAAATTGAAGAAGGATTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAGCGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGACAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGGACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTACTAGTCTCCGTTCTAAAGTCATTCCCGAACCAAAGTCATATTATCGTTGTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGTCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCTGACAAGGGAATTTCTCTTCGATTTCCTCGTCTTGTTCGTGTAAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACACCCACCAAAACAATAAAGATGACAATGAAGACGACTGA 2385 43.48 MLSLRSCYYLRPVALPLPHFKNLIFSNKPPSFKPIFHNFLSSMSSSRPSAFDALMSGARAAAAAKKKPVNPSPKKRKALDSLDPPPPKPSSSQVLESTPPVESQGGNHGGSHVVKSETAVDLGETKLRQDNGGSLGIKTSATNVQERTAKLKGSIPELKKKAKDFNSKNVACWKEGERVPCLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLLATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIIKVFDTFRLLAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAFGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSVLPVYDKLVPALLSGGVWELSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLMVSRIKNPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFKEETGYFQFATAIITNDLEEIQKFLDASVDGSCEGLIIKTLKRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSTSLRSKVIPEPKSYYRCGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHTHQNNKDDNEDD 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8522685 8529774 - Hsped.08g09260.1 Hepe08g0926 576898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0926 794 Gene3D - 157 424 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 MobiDBLite consensus disorder prediction 760 794 - -
Hepe08g0926 794 Gene3D DNA ligase/mRNA capping enzyme 451 576 - -
Hepe08g0926 794 Pfam ATP dependent DNA ligase domain 422 626 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 FunFam DNA ligase 157 424 - -
Hepe08g0926 794 CDD Adenylation_DNA_ligase_I_Euk 411 629 - -
Hepe08g0926 794 ProSitePatterns ATP-dependent DNA ligase signature 2. 600 626 IPR016059 GO:0003909(InterPro)
Hepe08g0926 794 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 155 791 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Hepe08g0926 794 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 446 454 IPR016059 GO:0003909(InterPro)
Hepe08g0926 794 CDD OBF_DNA_ligase_I 634 779 - -
Hepe08g0926 794 Gene3D - 631 793 IPR012340 -
Hepe08g0926 794 MobiDBLite consensus disorder prediction 62 113 - -
Hepe08g0926 794 ProSiteProfiles ATP-dependent DNA ligase family profile. 528 664 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 FunFam DNA ligase 422 628 - -
Hepe08g0926 794 Gene3D - 432 630 - -
Hepe08g0926 794 MobiDBLite consensus disorder prediction 94 111 - -
Hepe08g0926 794 SUPERFAMILY Nucleic acid-binding proteins 634 780 IPR012340 -
Hepe08g0926 794 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 414 632 - -
Hepe08g0926 794 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 162 413 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 Pfam ATP dependent DNA ligase C terminal region 651 762 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 NCBIfam ATP-dependent DNA ligase 238 777 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Hepe08g0926 794 Pfam DNA ligase N terminus 184 355 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe08g0926 794 FunFam DNA ligase 631 790 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0931 Hepe-Chr2:11242134 Hepe08g0926 Hepe-Chr8:8522685 1.42e-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0926 K10747 - csv:101213447 1386.7