Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0930 ATGTTTGACATGGAGCAAGTTGGAAAGCATTTCACGATGAACATCAACGACGACTTTGAGCTCCAAGATTTGATCCACGGCGACAATTTCGATCAATATGTCAATCTCATTCGTGGAGATCAGCACGAAAATCCGATATTCAACTTTGATCTTGATTTCATGAATGGTTGCTTGGTCGAAAATCGGCTCGATCCAAGCGCCGATTACATCCTAGATTCGAATATCGTCGTGAATTCTGATCCTAATTCTCTGTTTAGTACATTGGAGAGCTTCAATAGTATGATGAAAGAAGTTGAAAATGAAGACGACGACGAAGACGACACTTCTGTAGAGAATTCTTCAGTTACGACCACGAAATCAAAGGTCGACAGATCCAGAACTTTGATTTCTGAGCGAAGAAGAAGGGGAAGGATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACTAAGATGGATAAGGCTTCCATTGTAGGGGATGCAGTGCTATACGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTGAAAGCAGAGATATCAGTTTTGGAATCCTCAATCAACGAAACACAAACACTTTATCACTCAACTGATCAAACCCACAAGAAGATTCAAACTTCACGTTCAGACCAAACTCTCCCCTGCAAAATAATTCAGCTGGATGTTTTTCAAGTGGAGGAAAGAGGGTTTTATTTGAGGCTAGTGTGCAAGATGGGTGAAAGAGTAGCCATGTCTCTTTACAAAGTTCTTGAATCTCTTACCAGCTTCAATATTCAAAGCTCCAATTTGGCCTCTGCTGCTGACAGATTCATTCTCACTGCTACAATTCATGTGAGAGATTGTGAGGTGGACATGAACTTGCCAAATCTCAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 924 40.91 MFDMEQVGKHFTMNINDDFELQDLIHGDNFDQYVNLIRGDQHENPIFNFDLDFMNGCLVENRLDPSADYILDSNIVVNSDPNSLFSTLESFNSMMKEVENEDDDEDDTSVENSSVTTTKSKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQTLYHSTDQTHKKIQTSRSDQTLPCKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFNIQSSNLASAADRFILTATIHVRDCEVDMNLPNLKLWLTGALLNHGFEF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8561338 8563133 + Hsped.08g09300.1 Hepe08g0930 576902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0930 307 Gene3D - 112 188 IPR036638 GO:0046983(InterPro)
Hepe08g0930 307 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 305 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe08g0930 307 Coils Coil 168 195 - -
Hepe08g0930 307 Pfam Helix-loop-helix DNA-binding domain 127 172 IPR011598 GO:0046983(InterPro)
Hepe08g0930 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983(InterPro)
Hepe08g0930 307 MobiDBLite consensus disorder prediction 99 124 - -
Hepe08g0930 307 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 118 188 - -
Hepe08g0930 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 199 IPR036638 GO:0046983(InterPro)
Hepe08g0930 307 SMART finulus 128 177 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0930 Hepe-Chr8:8561338 Hepe09g0452 Hepe-Chr9:4087830 2.91e-17 dispersed
Hepe08g0930 Hepe-Chr8:8561338 Hepe08g2086 Hepe-Chr8:59143119 1.34e-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56170 PF00010 HLH 2.60E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0930 K26214 - csv:101213681 459.144