Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0936 ATGGGTCAGATTCAGTACTCCGAGAAGTACTTCGATGACATTTACGAGTATCGGCATGTGGTGCTCCCACCCGACGTAGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGACCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTTGCTCAACAAAACGTCCTTGCTGCTAAATGA 270 50.0 MGQIQYSEKYFDDIYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8616904 8618439 - Hsped.08g09360.1 Hepe08g0936 576908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0936 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Hepe08g0936 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Hepe08g0936 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Hepe08g0936 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Hepe08g0936 89 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
Hepe08g0936 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0936 Hepe-Chr8:8616904 HepeContig66g0213 Hepe-ChrContig66:17520265 3.07e-57 transposed
Hepe08g0936 Hepe-Chr8:8616904 Hepe10g0919 Hepe-Chr10:30869019 3.07e-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0936 K02219 - cit:102624930 168.703