Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0936 | ATGGGTCAGATTCAGTACTCCGAGAAGTACTTCGATGACATTTACGAGTATCGGCATGTGGTGCTCCCACCCGACGTAGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGACCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTTGCTCAACAAAACGTCCTTGCTGCTAAATGA | 270 | 50.0 | MGQIQYSEKYFDDIYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK | 89 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8616904 | 8618439 | - | Hsped.08g09360.1 | Hepe08g0936 | 576908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0936 | 89 | SUPERFAMILY | Cell cycle regulatory proteins | 1 | 83 | IPR036858 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | ProSitePatterns | Cyclin-dependent kinases regulatory subunits signature 1. | 6 | 24 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | SMART | CKS_2 | 3 | 72 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | FunFam | Cyclin-dependent kinases regulatory subunit | 1 | 84 | - | - | |
Hepe08g0936 | 89 | PANTHER | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 | 3 | 83 | - | GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER) | |
Hepe08g0936 | 89 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 18 | 32 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 40 | 54 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 3 | 17 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 55 | 69 | IPR000789 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | Gene3D | - | 1 | 83 | IPR036858 | GO:0016538(InterPro) | |
Hepe08g0936 | 89 | Pfam | Cyclin-dependent kinase regulatory subunit | 4 | 70 | IPR000789 | GO:0016538(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g0936 | Hepe-Chr8:8616904 | HepeContig66g0213 | Hepe-ChrContig66:17520265 | 3.07e-57 | transposed | |
Hepe08g0936 | Hepe-Chr8:8616904 | Hepe10g0919 | Hepe-Chr10:30869019 | 3.07e-57 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0936 | K02219 | - | cit:102624930 | 168.703 |