Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0945 ATGGATCAACAAATTCAGAATCCAGCCGCACTCTCCGTTGTACCTTGCATTGAGCTTCCAAGGCACCCTAATCGGCCTCAATCCACTTCCAGGTCTGAAGGGGAGTTCAAGGATTCAGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAAAGAGAAATTAAGAAGGGACCGATTGAATGAACAATTTGTGGAGCTGGGAAATATTTTAGATCCAGATCGGCCCAAAAATGACAAATCAACCATTATAATGGATACAATTCAATTACTGAAGGATTTGACTTCTCAAGTTAACAAACTGAAAACTGAGTATTCCACATTAACAGAAGAATCACGTGAGCTAGCCCAGGAAAAGAACGATCTGAGAGAAGAGAAGGCGTCACTCAAATCTGATGTTGAGAATCTTAATGCTCAGTATCAGCAGAGACTTAGGGCTTCATACCCTTGGGCTGCCATAGATAACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATATCCAGTGTCAATGCAAATGCCTCCAGGTTCATTTCCCCTGCATCCATCCTTGCAGCCTTATACGTTCTTCGGAAATCAGAATCCCGGGGTAATTGCAAACCCTTGTTCAACCTTCGTCCCATACATAGCTCCTAATACCTTGATTGAGCAGCAGTCCTCCCGAAATGTACCGCCTTTCTTTCATCCTCCAGGTAATCAGTCTCATAACTTGAGCAAGCAAGATACCAGGAGCAAGTCCTCAGGTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACCTACCTGGAGTTGAAGACTCCTGGATCCTCGACAGATCAGGATACATCATTTGAGCGAACAAAGGGTAAGAAAATGCGCAGGAAGGAAAATAATCTATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTCATCTCGTACTTTAGAGGTCAATTCCTCTAGTAACACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACACATAA 987 43.26 MDQQIQNPAALSVVPCIELPRHPNRPQSTSRSEGEFKDSAAARKVQKADKEKLRRDRLNEQFVELGNILDPDRPKNDKSTIIMDTIQLLKDLTSQVNKLKTEYSTLTEESRELAQEKNDLREEKASLKSDVENLNAQYQQRLRASYPWAAIDNSVVMAPAPFPYPVSMQMPPGSFPLHPSLQPYTFFGNQNPGVIANPCSTFVPYIAPNTLIEQQSSRNVPPFFHPPGNQSHNLSKQDTRSKSSGESKIEKSVDSNEVATYLELKTPGSSTDQDTSFERTKGKKMRRKENNLSEESSSSRCSSSRTLEVNSSSNTPNGRKSTDICGNT 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8751741 8755540 + Hsped.08g09450.1 Hepe08g0945 576917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0945 328 MobiDBLite consensus disorder prediction 1 53 - -
Hepe08g0945 328 SMART finulus 48 98 IPR011598 GO:0046983(InterPro)
Hepe08g0945 328 MobiDBLite consensus disorder prediction 36 53 - -
Hepe08g0945 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 92 IPR011598 GO:0046983(InterPro)
Hepe08g0945 328 MobiDBLite consensus disorder prediction 295 328 - -
Hepe08g0945 328 MobiDBLite consensus disorder prediction 276 294 - -
Hepe08g0945 328 MobiDBLite consensus disorder prediction 217 238 - -
Hepe08g0945 328 Pfam Helix-loop-helix DNA-binding domain 43 92 IPR011598 GO:0046983(InterPro)
Hepe08g0945 328 PANTHER TRANSCRIPTION FACTOR BHLH121 21 321 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Hepe08g0945 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 110 IPR036638 GO:0046983(InterPro)
Hepe08g0945 328 CDD bHLH_AtILR3_like 47 121 - -
Hepe08g0945 328 Coils Coil 82 137 - -
Hepe08g0945 328 MobiDBLite consensus disorder prediction 217 328 - -
Hepe08g0945 328 Coils Coil 41 61 - -
Hepe08g0945 328 Gene3D - 40 121 IPR036638 GO:0046983(InterPro)
Hepe08g0945 328 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0945 Hepe-Chr8:8751741 Hepe09g0127 Hepe-Chr9:1013728 1.38e-07 dispersed
Hepe04g1592 Hepe-Chr4:71405335 Hepe08g0945 Hepe-Chr8:8751741 3.91e-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56173 PF00010 HLH 1.60E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0945 - - - 0.0