Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0952 ATGGAGGTCGCCTTCTCTTCCAAGCCTCAATCATTGACGTTGAATCCATGTCTTCCTCTCAATTCATCTTCCTCCTTCTCCTACTCTCGGTTACGGTTTGTTCGCCGGCAATTCCTTGGCTGTGGTCACAATCTCCGACCTCCGGATGGCCTGCGTTCGCGACGACGGTGTAGGAAAGTTGGCTTGCTTGTTCAGTCTCCTCGATGCATCTTCCGAGCTACGTTCAATTCGAATCCGGTTCTTATCGTTGTTGCTGTGGTTACTTTCTCTGCTGTCTCCTTCATTTATATGAACTTCAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTCCAAAGCTTGCCTTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTCGATGGTCAGATGATGGGCTTTAGGGACCACCATGGCGACTTTTTAGAGCAGAACATAGCCGTAAAGGATAGAACTGAAGAGAGAAGTTATTCTGGGGAAGAAGAGACTGTTCTGCAACTTCAAAAATCTGTTCTGTCACATGAGGCCAGCGTCACCGAAACATTGCAGCCATCTGTTTCTGAAGTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAAAGTGAACCAGCAGATCCTTCCATTCTTTCTGATATATTTGAATCCGGCATCCTGCAGCCTCTTATTTTTGCCAATGGGATGACTGACATACAACTGAACGGATCTCATGTCAAATCTCACTCTGACTTGTCTGTTGTGGTTGATACAACTGAGCTTCCACCTGTTGCTGGTCCTTTATATAGTGTATATAATCAAGTGACTCAACATTTCAAAGCAGATGTCGAGCTTCCAAAAGAGGAAAAATTAACCAGTTCCAATTTTCTAACTGAAGAACCGGATAGAGAAGATATTTACATGTTCTATGAAGATTCAAAGTCAAGTAGTCAAACGGCAACTTCTTCTCGTACTTCTCATCTATACAAACAAAAAATTTCTTCAGTGAAGATTAACGGTGTCTCAAGAGGAGCAGAATTAGTGTCAGCGGACTCTCTTCAAATTGCTGCAGGATATGTTGAAAGAAAAGTACCTGTTACAAGATATAAGGAAGGTTCTTGCGGGGACAGAAAAAAATCTGGAGGAGGCAATGATATTTCAAGACATGGGGAAATAAAAGAATCCAGTCTGCATGAAGGAAAAGTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCTTAACAAAAATCTTCATGTAGATCAATATAAAGTCTACAATCAATGTCTGAGAGGTGGAAGGTTGCACGAATGTATCAAAATACTTCAAGATATGGAAAGAGAAGGCCTATTGGATATGAATAAGATTTATCATGGAAAGTTCTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCAAACTTATTTCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCTAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCAGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGGGCTGAGTTACATCCTATAGAACCTGATCATATTACAATTGGTGCTTTGATCAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAAGAGAAGTGTATAAGATGATCCATGACTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCCATTAATTGTTGTAGTCAATCTGGTGATTGGGACTTTGCTTCCAGTGTATATCAAGATATGACCAGGAAAGAAGTACAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAACTGGATGCTGCCTTTGAAATCTTAGGAGAAGCTAAGACACTAGGGATACGTGTTGGCATTATATCATATAGTTCGTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCGTTGGAACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTTTCAACTGTGAATGCACTTATAACTGCACTGTGTAATGGGGAACAACTACAAATGGCTATGGATATTCTGACTGAAATGAAGGGATTGGGACTGTACCCAAACAACATTACATACTCCATACTTATGGGTGCAAGTGAAAGGAATCGTGATTTAGAAATTGCCCTCATGCTCCTCTCTCAAGCGAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAGGTGCATACTTGGCATGTGCTTACGGAGAATTGCAGAACCCTCTTCCCTTGATAGACCACTCTTATTGCTCGACTCTAGACTGCCTCAAGTCGATAGTAAGTGGACAACACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCTGGAATTGTTCCGAGCATTGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCTGCCTTAAAGAGTAGACTCATAGAAAACATAGGAATAACTGCCGACTCATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATACGACCCTCGCGCATTTTCAATGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTCAAAGGAAGTCCTATTGTTGTAGATGTCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACGTAATGATCTTACTGCCAAATGAGACGACGCAAATTCTCTCTCCCAAGGGGGAGAAGACCATAAACCTTGCGGGAAGGTGA 3084 42.25 MEVAFSSKPQSLTLNPCLPLNSSSSFSYSRLRFVRRQFLGCGHNLRPPDGLRSRRRCRKVGLLVQSPRCIFRATFNSNPVLIVVAVVTFSAVSFIYMNFNRRKKNAVERSQSPKLALSQLGRGINWSVDGQMMGFRDHHGDFLEQNIAVKDRTEERSYSGEEETVLQLQKSVLSHEASVTETLQPSVSEVTTSKDSDSLFSDESEPADPSILSDIFESGILQPLIFANGMTDIQLNGSHVKSHSDLSVVVDTTELPPVAGPLYSVYNQVTQHFKADVELPKEEKLTSSNFLTEEPDREDIYMFYEDSKSSSQTATSSRTSHLYKQKISSVKINGVSRGAELVSADSLQIAAGYVERKVPVTRYKEGSCGDRKKSGGGNDISRHGEIKESSLHEGKVVNGLPYPNGKHVLNKNLHVDQYKVYNQCLRGGRLHECIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQEAFQYTKLISNPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALIKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAINCCSQSGDWDFASSVYQDMTRKEVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGIRVGIISYSSLMGACSNAKNWQKALELYEDLKSMKLRLTVSTVNALITALCNGEQLQMAMDILTEMKGLGLYPNNITYSILMGASERNRDLEIALMLLSQAKEDGIVPTLTMYRCILGMCLRRIAEPSSLDRPLLLLDSRLPQVDSKWTTQALMVYREIIEAGIVPSIEVLSQVLGCLQIPHDPALKSRLIENIGITADSSRSSNLCSLIDGFGEYDPRAFSMLEEAASLGVAPFVSLKGSPIVVDVKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNVMILLPNETTQILSPKGEKTINLAGR 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8794501 8805569 + Hsped.08g09520.1 Hepe08g0952 576924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0952 1027 Gene3D Tetratricopeptide repeat domain 560 722 IPR011990 GO:0005515(InterPro)
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Hepe08g0952 1027 Pfam Pentacotripeptide-repeat region of PRORP 558 719 IPR033443 -
Hepe08g0952 1027 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 429 560 - -
Hepe08g0952 1027 Gene3D Tetratricopeptide repeat domain 405 559 IPR011990 GO:0005515(InterPro)
Hepe08g0952 1027 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 707 854 - -
Hepe08g0952 1027 Pfam PPR repeat 729 757 IPR002885 -
Hepe08g0952 1027 Pfam PPR repeat 519 547 IPR002885 -
Hepe08g0952 1027 Pfam PPR repeat 424 445 IPR002885 -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Hepe08g0952 1027 Gene3D Tetratricopeptide repeat domain 723 852 IPR011990 GO:0005515(InterPro)
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Hepe08g0952 1027 MobiDBLite consensus disorder prediction 179 206 - -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 615 IPR002885 -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Hepe08g0952 1027 Pfam PPR repeat family 763 806 IPR002885 -
Hepe08g0952 1027 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 615 706 - -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 660 693 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 625 655 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 765 797 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 729 761 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 552 585 IPR002885 -
Hepe08g0952 1027 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Hepe08g0952 1027 MobiDBLite consensus disorder prediction 179 195 - -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 797 831 IPR002885 -
Hepe08g0952 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 1 1027 IPR053303 -
Hepe08g0952 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Hepe08g0952 1027 MobiDBLite consensus disorder prediction 365 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0952 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35