Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0963 ATGCCGCATCTCCTTCAGCAAATTCAGCTCTATCCACACCATTCCCCACTCAAGCTCTCATCTTCCCTCGCATCTTCACGCTTCCCCTCTCAATTTCAAGCTTCCCCGCCATGGAATTCCGTTTTCCTTGTTCGCCCACGTCCGGCAACGAGGGGCTTAACCATTCGGTGTATGGCCAATCCGCGGAGGGTTAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGACATGCTTCTTACTGATAAGGTGTTGCAGTACGCCATTCTTCCGGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCCTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTGTATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCCGGGTTGAAGTCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGACTAACTCCTGAGATACGTTTTATAGAAGATGAATCCTTTGAGAGAGGAAGTAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGAAGGATATCGATGATGAAGACTTTGAGCAATCTGAACTATCTGATGCTCCTCAAGATGACAGAGACTGGGAAGGTGATGATGCCGATGAAGATATAATATATGTACGATAG 672 46.58 MPHLLQQIQLYPHHSPLKLSSSLASSRFPSQFQASPPWNSVFLVRPRPATRGLTIRCMANPRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9002257 9005229 + Hsped.08g09630.1 Hepe08g0963 576935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0963 223 Hamap Ribosome-binding factor A [rbfA]. 62 180 IPR000238 GO:0006364(InterPro)
Hepe08g0963 223 Gene3D - 58 174 IPR015946 -
Hepe08g0963 223 SUPERFAMILY Ribosome-binding factor A, RbfA 58 183 IPR023799 -
Hepe08g0963 223 ProSitePatterns Ribosome-binding factor A signature. 146 167 IPR020053 GO:0006364(InterPro)
Hepe08g0963 223 FunFam probable ribosome-binding factor A, chloroplastic 58 174 - -
Hepe08g0963 223 Pfam Ribosome-binding factor A 63 179 IPR000238 GO:0006364(InterPro)
Hepe08g0963 223 NCBIfam 30S ribosome-binding factor RbfA 58 184 IPR000238 GO:0006364(InterPro)
Hepe08g0963 223 MobiDBLite consensus disorder prediction 190 223 - -
Hepe08g0963 223 MobiDBLite consensus disorder prediction 195 216 - -
Hepe08g0963 223 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 51 223 IPR000238 GO:0006364(InterPro)|GO:0042254(PANTHER)|GO:0043024(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0963 K02834 - - csv:101215399 305.449
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g60 . . . . . . . . . . Cma02g00357 . Car02g00224 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00426 . Chy11g00326 . . . . . . . . . Sed01g0251 Cmo02g00359 . . . . . . Cpe05g01299 Bhi10g01928 Tan05g1227 Cmetu11g1309 . Hepe08g0963 . . . . . . . . . . Csa02g01320 . Cme11g00451
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010825 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31