Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0964 ATGGCGACCGCCACTCTCAACCTCCCTTCTCTCTCTTCTTCTTCTTCTCTCTCTCATCCTTCTCCCTCCCTTCAAACCCCTTTCCCTCTCTCCTCTAAAACCCTCCCTAAATCCCACTTCCCCCATTCCCTCTCCCTTCCCAATCCCCCCAAACCCCTCCTCCTCCTCGCCGCCAAATCCCCCATCTCCCACTTCTTCTCCGCCGAAGACGACGACGACGACGACAAACCCCGCGAGGAGTGCGGCGTCGTCGGAATCTACGGCGACAACGAGGCCTCTCGCCTCTGCTATTTAGCCCTCCATGCCCTCCAGCACCGCGGCCAAGAAGGCGCCGGAATCGTCACCGTCAACGACAACGTCCTCCAGTCCATCACCGGCGTCGGCCTCGTCTCTGAGGTATTCAATCAAACCAAGCTCGATCAATTGCCCGGCGATTCTGCTATTGGCCATGTTCGTTACTCCACTGCTGGATCTTCCATGCTTAAGAACGTCCAGCCCTTCGTTGCTGGATACCGATTTGGCTCCGTTGGAGTTGCCCATAATGGTAATTTGGTTAATTATCAATCTCTTAGGGCTAAACTTGAAGAGACTGGTTCGATTTTCAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTTATTGCGATTTCTAAACATAGACCTTTTTTGTTGAGGATTGTTGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTGGTTGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTTTTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAGGCAACATATGAGAGAGAAGTCTTTCCTGGGGAACTTTTGGTGGTTGATAAAAATGGGATTCAATCCCTCTGTTTGATGGCTCATCCCCAGCCGAAATCCTGCATATTCGAACACATTTACTTCGCTCTCCCGAACTCCGTTGTTTTCGGGCGTTCTGTCTACGAATCCCGCCGAGCATTCGGGGAGATACTCGCCACCGAAGCCCCTGTCGATTGTGATGTTGTGATTGCTGTCCCGGATTCGGGTGTAGTGGCTGCTCTTGGCTATGCAGCCAAAGCTGGGGTGGCTTTCCAACAGGGCCTCATAAGGTCTCACTATGTGGGGAGGACATTCATTGAGCCATCGCAGAAGATTCGCGACTTCGGCGTGAAGCTGAAGCTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTAGTGGTTGTGGATGACTCGATTGTTAGAGGCACAACATCTTCAAAGATTGTGAGGTTGCTAAAGGAAGCAGGGGCAAAAGAAGTGCATATGAGGATAGCCAGCCCTCCAATTATAGGGTCATGCTATTATGGAGTGGACACACCAAGTTCTGAAGAATTGATCTCCAATAGGCTGAATGTGGAGGAAATAAGGGAGTTTATAGGGTCTGATTCTCTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTGGGAAGTGATTCTCCAAACTTTTGCTATGCTTGCTTTTCAGGCAACTACCCAGTTGAACCAAGAGAGATAAAAGTGAAAAAGGTTGGAGATTTTATTGATGATGGGTTGAATGGGAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTAACAGAAACCAGAAGCAGCTTGAAAGTCCTCTCAAAGTGGAGAAAGTTGGGGGCCTCTGA 1725 48.58 MATATLNLPSLSSSSSLSHPSPSLQTPFPLSSKTLPKSHFPHSLSLPNPPKPLLLLAAKSPISHFFSAEDDDDDDKPREECGVVGIYGDNEASRLCYLALHALQHRGQEGAGIVTVNDNVLQSITGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYQSLRAKLEETGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGELLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRLNVEEIREFIGSDSLAFLPFDSLKKLLGSDSPNFCYACFSGNYPVEPREIKVKKVGDFIDDGLNGSLESIDGGWVQANRNQKQLESPLKVEKVGGL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9022249 9024492 + Hsped.08g09640.1 Hepe08g0964 576936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0964 574 Hamap Amidophosphoribosyltransferase [purF]. 80 521 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Hepe08g0964 574 Gene3D - 340 504 IPR029057 -
Hepe08g0964 574 MobiDBLite consensus disorder prediction 1 43 - -
Hepe08g0964 574 SUPERFAMILY PRTase-like 316 527 IPR029057 -
Hepe08g0964 574 Pfam Phosphoribosyl transferase domain 338 450 IPR000836 -
Hepe08g0964 574 NCBIfam amidophosphoribosyltransferase 81 522 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Hepe08g0964 574 MobiDBLite consensus disorder prediction 1 41 - -
Hepe08g0964 574 Pfam Glutamine amidotransferase domain 161 278 IPR017932 -
Hepe08g0964 574 CDD PRTases_typeI 343 454 IPR000836 -
Hepe08g0964 574 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 81 522 IPR029055 -
Hepe08g0964 574 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 81 304 IPR029055 -
Hepe08g0964 574 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 81 300 IPR017932 -
Hepe08g0964 574 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 75 529 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
Hepe08g0964 574 CDD GPATase_N 81 331 IPR035584 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0964 K00764 - - csv:101203840 969.918
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe08g0964 . 76 554 PRT Gene Family AT2G16570 85.7 2.1e-240 828.6
Hepe08g0964 . 76 554 PRT Gene Family AT4G34740 86.3 5.0e-242 833.9
Hepe08g0964 . 27 527 PRT Gene Family AT4G38880 69.8 2.8e-194 675.2
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe06g1657 . 6 104 PRT Gene Family AT4G22570 82.8 5.3e-44 173.7
Hepe06g1149 . 5 97 PRT Gene Family AT4G22570 84.9 1.5e-43 172.2
Hepe08g1328 . 78 170 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Hepe10g0243 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Hepe06g1657 . 1 96 PRT Gene Family AT4G12440 84.4 1.1e-40 162.5
Hepe06g1149 . 1 96 PRT Gene Family AT4G12440 82.3 2.5e-40 161.4
Hepe08g1328 . 74 169 PRT Gene Family AT4G12440 78.1 2.6e-37 151.4
Hepe10g0243 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe02g2821 . 1 186 PRT Gene Family AT1G71750 67.0 1.9e-71 265.8
Hepe10g1913 . 13 467 PRT Gene Family AT1G55810 85.3 3.7e-227 784.3
Hepe02g0973 . 19 482 PRT Gene Family AT1G55810 73.3 6.5e-200 693.7
Hepe10g1913 . 64 480 PRT Gene Family AT3G27440 74.4 1.8e-183 639.0
Hepe02g0973 . 80 482 PRT Gene Family AT3G27440 74.7 2.6e-179 625.2
Hepe02g0973 . 1 482 PRT Gene Family AT3G27190 86.3 1.3e-246 849.0
Hepe10g1913 . 3 466 PRT Gene Family AT3G27190 73.7 2.0e-207 718.8
Hepe04g0824 . 3 285 PRT Gene Family AT3G53900 67.2 1.4e-105 379.8
Hepe10g1913 . 1 467 PRT Gene Family AT4G26510 84.3 2.7e-233 804.7
Hepe02g0973 . 11 482 PRT Gene Family AT4G26510 75.4 1.7e-211 732.3
Hepe02g0973 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-246 847.0
Hepe10g1913 . 3 469 PRT Gene Family AT5G40870 73.0 5.0e-206 714.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40