Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0965 ATGCCGGCCCTAGCTTATTGCGTGGACGCTGCTGCAGCTCCTCCTCCTGGCTACGCTTTTGCTGGGGATAGCTCTCTTCCGTCGCCGGTCTTCTTTTCCACCGGACCTCCGGAGACTACTACCATCTTCACCTCTCCCACCGCTGTTCCCACCTCTGAAATTCCGTCTTGGTCTCCTTCTATGTCTTCTTCCCTTTACAAGATCGATGGATGGGGTGCCCCTTATTTCTCTGTCAATGGCTCTGGGAACATGGCTGTTCGTCCTTATGGTACCGCCACTTTGCCCCATCAGGAGATTGATTTGCTCAAGATTGTTAAGAAGGCTTCAGATCCGATTTGCTCCGGCGGCCTTGGCTTGCAGCTTCCTCTGATTGTCCGGTTTCCCGATGTGCTTAAGAACCGTCTGGAGTCTCTCCAGTCGGCATTTGATTATGCTATTCAATCTCAGGGATATGGCTCTCACTACCAGGGTGTTTATCCAGTCAAATGTAACCAGGACAGGTTCGTTGTTGAAGACATCGTGAAATTCGGATCTCCTTTCCGATTCGGTCTCGAGGCTGGATCGAAACCGGAGCTCCTCCTAGCAATGAGCTGTTTGTGCAAAGGGAATAGAGATGCCCTTTTGGTGTGCAATGGTTTCAAGGATGTCGAGTACATTTCTTTGGCCCTGATTGCGAGGAAGCTCGCTTTGAACACCGTGATTGTGCTCGAACAAGAAGAAGAGCTTGATTTGGTTATTGATTTGAGCAAGAGGATGTTCGTTCGACCTGTGATTGGCATGCGTGCCAAGCTGAGAACCAAGCATTCTGGTCATTTTGGGTCTACATCAGGCGAGAAAGGGAAATTTGGTCTTACCACCACGCAGATTCTTCGCGTTGTTAGGAAGCTTCAACAGGCTGATATGCTCGATTGCCTTCAATTGCTACATTTTCATATTGGATCTCAGATCCCAACCACCGCCTTGCTGGCCGATGGCGTTGGCGAGGCCGCTCAGATCTATTGTGAATTGGTCCGTCTTGGTGCCAACATGCGAGTTGTTGACATTGGAGGTGGTCTTGGTATTGACTATGACGGGTCGAAGTCTTCGGACTCTGAGTTATCTGTTGCTTATGGGCTTGAAGAGTATGCCTCTACTGTTGTTGATGCAGTCCGCTGTGTTTGCGACCGTCGGTCCGTTAAGCACCCAATAATTTGCAGTGAAAGTGGCCGAGCAATCGTTTCTCATCACTCTGTTCTGATATTTGAGGCTGTGTCTGCTAGTTCTTATGAGGTCCCATCCATGAGCTCGCTTGAACTTCAGTATCTTGTGGATGGGCTAACAGATGATGCTCGAATCGATTATCAGAACCTCTCGGCTGCAGCTTATATGGGTGAGTATAAGACATGTTTGCTGTATGCAGACCAATTGAAACAGCGCTGCGTTGAGAAATTCAAAGATGGGTGTTTGGGAATGGAGCAACTGGCTGCAGTGGATGGGCTTTGTGATCTGGTTTCGAAGGCAGTTGGAGAGTTGGACTCTGTAAGAACTTACCATGTGAACCTCTCTGTTTTCACCTCAATCCCAGATTTCTGGGGTATTGAGCAGCTGTTTCCTATAATCCCGATTCATCGTCTCGATCAGAGACCTTCAGTGAGGGGAATTCTGTCTGATCTAACCTGTGACAGCGATGGGAAGATTGATAAGTTCATCGGTGGTGAGTCGAGCTTGCCGTTGCACGAGCTGGAAGGCAACGGCAATTTGTCAGGTGGAGGTGGTGGGCGATACTATCTTGGGATGTTTCTGGGTGGGGCTTATGAGGAGGCTCTCGGTGGTGTTCACAATCTCTTTGGTGGCCCAAGCGTGGTTCGAGTAATGCAGAGCGATGGACCGCATAGCTTTGCGGTGACTCGCACTGTGCCTGGGCCATCATGCGGGGATGTCCTCCGAGTGATGCAGCACGAGCCGGAACTCATGTTCGAGACCCTCAAGCACCGTGCGGAGGAGTTTGCACAGGAGGAGGATGATGATGGTGTTGGTGGCATAGCCAATAGCTTGGCCATGTCGTTCCGCAACATGCCTTATTTGGCTAGCGCGTCGTCCTGCTGCAATGAGACTGATTACAATGGTGCTGTGGATTCTGGTGCTGGTGATGCCGAGCAGTGGACTTGCTGCTATGCTTGA 2160 50.32 MPALAYCVDAAAAPPPGYAFAGDSSLPSPVFFSTGPPETTTIFTSPTAVPTSEIPSWSPSMSSSLYKIDGWGAPYFSVNGSGNMAVRPYGTATLPHQEIDLLKIVKKASDPICSGGLGLQLPLIVRFPDVLKNRLESLQSAFDYAIQSQGYGSHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNRDALLVCNGFKDVEYISLALIARKLALNTVIVLEQEEELDLVIDLSKRMFVRPVIGMRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVRKLQQADMLDCLQLLHFHIGSQIPTTALLADGVGEAAQIYCELVRLGANMRVVDIGGGLGIDYDGSKSSDSELSVAYGLEEYASTVVDAVRCVCDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASSYEVPSMSSLELQYLVDGLTDDARIDYQNLSAAAYMGEYKTCLLYADQLKQRCVEKFKDGCLGMEQLAAVDGLCDLVSKAVGELDSVRTYHVNLSVFTSIPDFWGIEQLFPIIPIHRLDQRPSVRGILSDLTCDSDGKIDKFIGGESSLPLHELEGNGNLSGGGGGRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVMQSDGPHSFAVTRTVPGPSCGDVLRVMQHEPELMFETLKHRAEEFAQEEDDDGVGGIANSLAMSFRNMPYLASASSCCNETDYNGAVDSGAGDAEQWTCCYA 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9073950 9076109 + Hsped.08g09650.1 Hepe08g0965 576937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0965 719 CDD PLPDE_III_ADC 118 617 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 235 256 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 259 281 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 513 534 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 387 404 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 127 142 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 538 563 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 596 617 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 151 165 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Arginine decarboxylase signature 209 224 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 NCBIfam arginine decarboxylase 57 688 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 66 619 IPR009006 GO:0003824(InterPro)
Hepe08g0965 719 Gene3D - 426 506 - -
Hepe08g0965 719 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 340 353 IPR022657 -
Hepe08g0965 719 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 159 177 IPR022653 -
Hepe08g0965 719 Gene3D Alanine racemase 128 409 IPR029066 -
Hepe08g0965 719 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 154 407 IPR022644 GO:0003824(InterPro)
Hepe08g0965 719 PANTHER ARGININE DECARBOXYLASE 1 690 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(PANTHER)|GO:0008792(InterPro)
Hepe08g0965 719 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 302 315 IPR000183 GO:0003824(InterPro)
Hepe08g0965 719 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 397 416 IPR000183 GO:0003824(InterPro)
Hepe08g0965 719 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 159 177 IPR000183 GO:0003824(InterPro)
Hepe08g0965 719 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 183 195 IPR000183 GO:0003824(InterPro)
Hepe08g0965 719 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 596 609 IPR000183 GO:0003824(InterPro)
Hepe08g0965 719 SUPERFAMILY PLP-binding barrel 127 409 IPR029066 -
Hepe08g0965 719 PIRSF ARGDC 41 692 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Hepe08g0965 719 FunFam Biosynthetic arginine decarboxylase 128 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0965 K01583 - - csv:101204085 1305.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43