Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0983 ATGAAGATTCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCTGCCCTCTGCGCCTCCTGCGACCGTCACGTCCACCACGCCAATAAGCTCGCCGGAAAACACCACCGTTTCTCTCTCCTCCGCTCCCCCGCCGATGATTCTCCGCCGTTGTGTGATATCTGCCAGCTCCGGCGAGCATTTCTGTTCTGTCACGAAGACAGAGCAATCCTCTGTAGAGAATGTGACATTCCCATTCACAGCGCCAACGAACACACCCAGAAGCACACCCGGTTTCTTCTCACTGGAGTCAAGATCTCGCCGTCGCAGTCGCCGGAAACCCCTTCTTCCTCCCCCTGCTCCGTCGCCGGCGGCGGCGGAATGGAGGCGACAGGAATTGAAGCGGCTGAAATTGGGATTTTCAAGGGGTCCTTGAGGAAGAGAGCTAAAATGGGGTGTAATGGGTTTGTTGGAGGTCCTTTAATGGAGGATTTACAGGCATCGATTGAAGAAAGTGGAATGAATGAAAATGGGGTTTCGTTTTCGAGGAGCAGCATTTCAGAGTATTTACAGAGTTTGCCTGGATGGTGTGTGGAGGACTTTCTTGATTCTTCATGTGCTGCTGATGTTTTCTGCAGAGTTTGA 645 51.78 MKIRCDVCNKEEASVFCPSDEAALCASCDRHVHHANKLAGKHHRFSLLRSPADDSPPLCDICQLRRAFLFCHEDRAILCRECDIPIHSANEHTQKHTRFLLTGVKISPSQSPETPSSSPCSVAGGGGMEATGIEAAEIGIFKGSLRKRAKMGCNGFVGGPLMEDLQASIEESGMNENGVSFSRSSISEYLQSLPGWCVEDFLDSSCAADVFCRV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9285986 9286630 - Hsped.08g09830.1 Hepe08g0983 576955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0983 214 CDD Bbox1_BBX-like 58 101 IPR049808 -
Hepe08g0983 214 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Gene3D Classic Zinc Finger 1 101 - -
Hepe08g0983 214 FunFam B-box zinc finger protein 21 1 99 - -
Hepe08g0983 214 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe08g0983 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Hepe08g0983 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 SMART bboxneu5 54 101 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0983 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0983 Hepe-Chr8:9285986 7.88e-09 dispersed
Hepe01g1643 Hepe-Chr1:81637092 Hepe08g0983 Hepe-Chr8:9285986 1.08e-49 wgd
Hepe10g0125 Hepe-Chr10:1269043 Hepe08g0983 Hepe-Chr8:9285986 6.23e-57 wgd
Hepe02g0478 Hepe-Chr2:4666861 Hepe08g0983 Hepe-Chr8:9285986 4.48e-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0511 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.9e-56 216.9
Hepe10g0202 . 1 241 C2C2-CO-like Transcription Factor Family AT5G24930 58.8 4.6e-47 185.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 1.4e-86 317.0
Hepe08g0372 . 69 278 C2C2-CO-like Transcription Factor Family AT3G07650 54.6 4.0e-46 182.6
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0478 . 1 203 C2C2-CO-like Transcription Factor Family AT1G75540 58.0 8.8e-53 204.5
Hepe01g1643 . 1 215 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 4.4e-52 202.2
Hepe08g0983 . 1 205 C2C2-CO-like Transcription Factor Family AT1G75540 52.4 4.0e-45 179.1
Hepe07g0738 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.8e-57 217.2
Hepe04g1574 . 1 128 C2C2-CO-like Transcription Factor Family AT2G21320 74.2 1.2e-50 196.4
Hepe07g0738 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 4.6e-59 224.6
Hepe04g1574 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 60.8 1.0e-50 196.8
Hepe02g0478 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 2.2e-53 206.1
Hepe08g0983 . 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.5 1.4e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56175 PF00643 zf-B_box 1.80E-06 No_clan Hepe TF