Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0983 ATGAAGATTCGTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCTGCCCTCTGCGCCTCCTGCGACCGTCACGTCCACCACGCCAATAAGCTCGCCGGAAAACACCACCGTTTCTCTCTCCTCCGCTCCCCCGCCGATGATTCTCCGCCGTTGTGTGATATCTGCCAGCTCCGGCGAGCATTTCTGTTCTGTCACGAAGACAGAGCAATCCTCTGTAGAGAATGTGACATTCCCATTCACAGCGCCAACGAACACACCCAGAAGCACACCCGGTTTCTTCTCACTGGAGTCAAGATCTCGCCGTCGCAGTCGCCGGAAACCCCTTCTTCCTCCCCCTGCTCCGTCGCCGGCGGCGGCGGAATGGAGGCGACAGGAATTGAAGCGGCTGAAATTGGGATTTTCAAGGGGTCCTTGAGGAAGAGAGCTAAAATGGGGTGTAATGGGTTTGTTGGAGGTCCTTTAATGGAGGATTTACAGGCATCGATTGAAGAAAGTGGAATGAATGAAAATGGGGTTTCGTTTTCGAGGAGCAGCATTTCAGAGTATTTACAGAGTTTGCCTGGATGGTGTGTGGAGGACTTTCTTGATTCTTCATGTGCTGCTGATGTTTTCTGCAGAGTTTGA 645 51.78 MKIRCDVCNKEEASVFCPSDEAALCASCDRHVHHANKLAGKHHRFSLLRSPADDSPPLCDICQLRRAFLFCHEDRAILCRECDIPIHSANEHTQKHTRFLLTGVKISPSQSPETPSSSPCSVAGGGGMEATGIEAAEIGIFKGSLRKRAKMGCNGFVGGPLMEDLQASIEESGMNENGVSFSRSSISEYLQSLPGWCVEDFLDSSCAADVFCRV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9285986 9286630 - Hsped.08g09830.1 Hepe08g0983 576955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0983 214 CDD Bbox1_BBX-like 58 101 IPR049808 -
Hepe08g0983 214 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 Gene3D Classic Zinc Finger 1 101 - -
Hepe08g0983 214 FunFam B-box zinc finger protein 21 1 99 - -
Hepe08g0983 214 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe08g0983 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Hepe08g0983 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe08g0983 214 SMART bboxneu5 54 101 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0983 Hepe-Chr8:9285986 7.88e-09 dispersed
Hepe01g1643 Hepe-Chr1:81637092 Hepe08g0983 Hepe-Chr8:9285986 1.08e-49 wgd
Hepe10g0125 Hepe-Chr10:1269043 Hepe08g0983 Hepe-Chr8:9285986 6.23e-57 wgd
Hepe02g0478 Hepe-Chr2:4666861 Hepe08g0983 Hepe-Chr8:9285986 4.48e-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56175 PF00643 zf-B_box 1.80E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0983 - - - 0.0