Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0987 ATGGCGGAGCAAATGACCGAGGTTGGTAGCTCAACGAAGGAAGGAGGAGAGGTGGAGAAGGAGAAACAGAAGAAAAATGTGGATCCGGAACTTATCAGCTGCTTGCTCCAACCTGTGATTGTTGGTGTTGATTCGGATTATATTGGCATTCGTCGTCTCTTGCTCTGTCGGAAGGGCGAAGCCGGAATTCGTCGTCGTACAGAATGGAAGTGCAATGGAAAAGGTTATGTGGCATTCCGCAATTTCATTCGCCGGCCAAGGAATTGGGATAGCTCGCGTGTAACAAGTCTTCAAAGCACCCCTGGAAACAGTGGAAGATGGGCTCCTCCTCCAAATCCTCTCTCTCTCTTGCATGAGGTGGAGAGCTTGAGTTCTAGCAAGAGTCACCGAAGATCAAGTTTTAGCTCAAGTACAAGTGATAATAGTCAGCTACATACTCGTAAAGTTGAACTTGCATATTCTTTTGTAGGAATGCACTGTATATTTGATCAATGCAAAGCCGCTGTTACGGTTTTGAAGTTTGGGCACATGAGCTCTGATCTATTAGCATATGGGGCATCAAATGGGAGCTTAACTGTATGCAATGTCTCTGAACCATCTTCAACTGTCAAGCAATTGCTGGGCCATTCAAAAGACGTCACAGACTTTGATTTTTCATCAAATAATCAGTACATTGCATCATCATCCATGGATAAAACCGTTAGAGTATGGGAGATATCAAGAGGACTTTGCATTAGAGTAATCTATGGAGTATCTTCACAATTGTGTATACGTTTTCATCCGGTAAATAACAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACTGGCAGGGTTATGACAAAATCAGTTCTTGATAGTGAGGTTACCTCCATGGACCATGATCACACTGGTCAGCTCCTTTTCTGTGGGGACGGAAATGGATATGTTTACTCTGTGAGCATGAACTCTCATACAGGAGCATTATCCCGTTCTCACCGCCAGTGGTGTAGTAGTCGGCGAAAATCTCCTGTATCTACTGTACAATATCGAAGCTTCTCTCTGCTGGCTAGGGGCCCTGTATTGCTAACTTGCACTCAAGATGGGAACTTGTCTTTCTTCAGGTTTTGTCAACATAAAATGACTTTCATTTTATTTCTTTTATTTCTCGATGACTACTTATAA 1185 43.04 MAEQMTEVGSSTKEGGEVEKEKQKKNVDPELISCLLQPVIVGVDSDYIGIRRLLLCRKGEAGIRRRTEWKCNGKGYVAFRNFIRRPRNWDSSRVTSLQSTPGNSGRWAPPPNPLSLLHEVESLSSSKSHRRSSFSSSTSDNSQLHTRKVELAYSFVGMHCIFDQCKAAVTVLKFGHMSSDLLAYGASNGSLTVCNVSEPSSTVKQLLGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEISRGLCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRVMTKSVLDSEVTSMDHDHTGQLLFCGDGNGYVYSVSMNSHTGALSRSHRQWCSSRRKSPVSTVQYRSFSLLARGPVLLTCTQDGNLSFFRFCQHKMTFILFLLFLDDYL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9334998 9348733 + Hsped.08g09870.1 Hepe08g0987 576959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0987 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 Gene3D - 152 386 IPR015943 GO:0005515(InterPro)
Hepe08g0987 394 SMART WD40_4 155 195 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 SMART WD40_4 199 238 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 SMART WD40_4 282 321 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 SMART WD40_4 241 280 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 SUPERFAMILY WD40 repeat-like 160 379 IPR036322 GO:0005515(InterPro)
Hepe08g0987 394 MobiDBLite consensus disorder prediction 1 23 - -
Hepe08g0987 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 242 - -
Hepe08g0987 394 Pfam WD domain, G-beta repeat 202 237 IPR001680 GO:0005515(InterPro)
Hepe08g0987 394 ProSitePatterns Trp-Asp (WD) repeats signature. 225 239 IPR019775 -
Hepe08g0987 394 PANTHER WD REPEAT PROTEIN 26-RELATED 149 376 IPR051350 GO:0005634(PANTHER)|GO:1990841(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0987 K24739 - - csv:101204649 613.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0808 Hepe-Chr6:54866251 Hepe08g0987 Hepe-Chr8:9334998 3.17e-07 dispersed
Hepe08g0987 Hepe-Chr8:9334998 Hepe09g0731 Hepe-Chr9:6975195 6.42e-06 dispersed
Hepe08g0987 Hepe-Chr8:9334998 Hepe04g0857 Hepe-Chr4:62839690 1.27e-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32