Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0990 ATGGCTACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCGAGGGGAGCTCTGCTCGGTTCGTATGAAGAAACAGCGGTTCTTCCTCGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCACAGGCGCAAAATGGTTGCGGTCAGATAACGTCGGTTGGAGGAGCGGGAACTGCCCAACAGCAGCAAGAGTTTTTGTCGAATCTTGGTGGTTCGCAAATTGCCGAGCATGATTTCAATACATGGAGAGAGGACAGGAGTGAAATGCTCGGTACGAACTCGATGCGTGGCCCGACCAATATTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATTCCATCTGGAATCCAAATGTCTTCAATCTCATATAGGAATTCGGATATGGGGTTAACTTCATTCTTGAGTCCTAATCCGACGAATTCAGGTGAGGATGGCTGCAGAAATGGCGCTTCAAGAGACGAGCAGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGTGCGATTTATCTCAGTACAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCACAACAACTTCTTGATGAAGTTGTTAATGTGAGGAAAGCTTTGAAGCGACCTAGTAATGAGAGAAACCAGAGCTCACATGAGCACGAAAATAGGAGTGCAAAGAATGGTGATGCAGGAACCAAAAACGACTGTTCGATGCTCACCGCGAGCGGAGTATCTTCAAACCCTCAAGACACTGTGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTAGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCCGGATGTGGGGCATCGAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCACTTTCGATGCTTGCGGGATGCAATAGCTGGTCAAGTTAGAGCTACACGTAAAAGCCTGGGAGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATACGTGGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTCTCGATTCTCCGTGCTTGGCTGTTTGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGGCAGGCAGTGTAGACATGGATTCTATATCATCATCTGAAAATGCTGGGAAGGCAACAAAAGGAAATAACAAGACCTTTGAGGATGATGATAAAGAGGAAGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGTGCCGGAGATATTATCGACTTAAAATCTGATCAAGCCTCTAATCTTGGAAATTCTGGTTCCACCAGGCTACCTAGTTTCCAAAATAGCGCTCACATCGAAGCCCAAAACGAGCTGGTAAAGCCGAGGGAGGAGTTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCACTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCATCACATGTCTGAATTGGGAAGGTTTGGGCCGGTTAGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCTGCTGGGTCACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTCCTCTCGGGGAAACAGTCCATTTTGAATGCGTAAATGCTGGGAATCCGCAACCAAGGTTCGGCCCCTCTCATCTTTATCATGATTTTGTTGTGTAA 2052 45.81 MATYYSSSNNERDATPILYSRGALLGSYEETAVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGGAGTAQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGTNSMRGPTNILHGGQNLQGQGLSLTLSTQIPSGIQMSSISYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPNFQELAKCDLSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPSNERNQSSHEHENRSAKNGDAGTKNDCSMLTASGVSSNPQDTVSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGSVDMDSISSSENAGKATKGNNKTFEDDDKEEDLQQSTSSTATERCSAGDIIDLKSDQASNLGNSGSTRLPSFQNSAHIEAQNELVKPREELRPNVNNSNFFPDAIVHSQGESDRFMAAAAAYHHMSELGRFGPVSGVSLTLGLQHCEGGGIPMPAGSHHGFAAMRGDDMYNAAASPLGETVHFECVNAGNPQPRFGPSHLYHDFVV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9375544 9380255 + Hsped.08g09900.1 Hepe08g0990 576962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0990 683 MobiDBLite consensus disorder prediction 231 286 - -
Hepe08g0990 683 FunFam BEL1-like homeodomain protein 4 409 471 - -
Hepe08g0990 683 Pfam Associated with HOX 208 355 IPR006563 -
Hepe08g0990 683 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Hepe08g0990 683 SMART prehox3 201 356 IPR006563 -
Hepe08g0990 683 MobiDBLite consensus disorder prediction 151 183 - -
Hepe08g0990 683 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Hepe08g0990 683 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Hepe08g0990 683 MobiDBLite consensus disorder prediction 253 286 - -
Hepe08g0990 683 MobiDBLite consensus disorder prediction 480 496 - -
Hepe08g0990 683 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g0990 683 Coils Coil 288 308 - -
Hepe08g0990 683 Gene3D - 401 480 - -
Hepe08g0990 683 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Hepe08g0990 683 MobiDBLite consensus disorder prediction 231 252 - -
Hepe08g0990 683 MobiDBLite consensus disorder prediction 151 167 - -
Hepe08g0990 683 MobiDBLite consensus disorder prediction 476 526 - -
Hepe08g0990 683 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 501 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1615 Hepe-Chr3:73054695 Hepe08g0990 Hepe-Chr8:9375544 8.52e-103 dispersed
Hepe08g0194 Hepe-Chr8:1759131 Hepe08g0990 Hepe-Chr8:9375544 2.94e-86 dispersed
Hepe08g0990 Hepe-Chr8:9375544 HepeContig66g0009 Hepe-ChrContig66:2695455 7.66e-79 dispersed
Hepe08g0990 Hepe-Chr8:9375544 Hepe05g0443 Hepe-Chr5:5748508 3.83e-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56176 PF07526 POX 7.90E-51 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0990 - - - 0.0