Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0991 ATGGATGCGACCATTGACTTCTCTCCCAATAGCTACGCCACTCCAAATGGATTGCATTACGGGAGACGTAAGAGGCTAAAATTATCTACTGATGGAAAAGATCTTCCTGGCGCTGCCACCTTTTCTGCCCAAAAATGTGACACACCGAGACAAAACAAAATGAAGAACTCAACAAAACTTATTGATTACTCTGATCCGTTTGCCATTAATAATTTGATCGATGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGAAGCCCTTGTTTCCCGTAAGATTCAAGTTCTAAGTCCTTACATTTCCAAGTATCCTACGCTGTCAAGTATGTTATTTGATCTGGGGAGAAGTAGAGAGTGTACAGAGGAAATGAATCATCAAACTTCCCAATTGGTTCATAATCTCATTGATTTGGAGGATGATTCTGATATTGTTGTTCGTTCCAACAATGTTGAGAAATCACGATTGCCTATCGTAATTATTGATTCCGATGAGGAAGAAAGCATAGATCAGAGGCGTGGTGAGCTCGTTAGACATCCATTTCAAGAGGTTCTGCTGCCTAGACCACCTGGACAAAGTTTCTTGAAGGACATAGTGGTAGTGGATCACCGAGCTTCAAATGGGGAGAAAGCATCGTTTTCTGTTTCAAAAAAAAAAGGGGAGAAAGCAACTCCTATTGGTGAAAGTGAAACTATAAGTAAGAAAGAGTCAGACAAAGGTGTTTACGTTGGTGTAGAAGAGGATGAGGATGAGGTCAGCGAACAGGCTAACAGTGAAGATGATGGTCTTGGAGACATTTGGAACGATATGAACATGGCATTAGAATGTTCCAAGGACTTGGATGTCGCTGTAGATTCATCATCTAATCAAGAAACTACAGATGCTGTGGACTGTGATCATTCTTTTCTCTTGAAGGAAGATATTGGTTATGTCTGTCGCATTTGTGGGGTTATTGACAGAGGAATTGAGACCATTTTTGAGTTTCAGTACAACAAGGGTAAGAGGACCACAAGAACATACATGTATGAATCTCGTAACAAAGAGTCGGGCGATGTTGTTGGAGTTAAAATTTCAGAAGATGATTTGATGGTAACTGAAATTTGTGCACACCCTAGACATAAGAAGCAAATGAAACCTCATCAAATTGAGGGTTTCAATTTCCTCACAAGCAACTTGGTAGGTGACAATCCAGGAGGCTGCATTTTGGCCCATGCTCCTGGATCTGGAAAAACATTTATGATAATCAGTTTCATGCAAAGTTTTTTAGCCAAGTATCCACAGGCTAGACCATTGGTTGTGCTTCCCAAAGGAATCTTGGCTACATGGAAAAAGGAGTTTCAGATATGGCAAGTGGAAGATATTCCACTCTATGATTTCTATTCCGTTAAAGCAGAAAATAGGGCTCAACAGCTGGCAGTACTGAATCAGTGGGTCGAGAACAGAAGTATTCTGTTCTTAGGATACAAACAATTTTCCACAATCGTCGGCGACGTTGAAGCTAGTGCTTCATCAACTGCATGTCAAAATATATTGCTCAAGGTTCCTTCGATTCTTATTCTAGATGAGGGGCATACTCCAAGAAATGAGAACACTGATATTTTGCAAACTCTTGCCAAAGTCAGAACTCCACGAAAAGTGGTTCTTTCAGGAACCCTATATCAAAATCATGTTAAAGAGGTATTCAATATAGTGAATCTTGTTCGACCAAAATTCATGAGATCAGAAACTTCTCGACCTATCATCAAGCGCATCATGTCGAGAGTGGAGATACCTGGTGTAAGGAAGCAGTTCAAAGCAGGCGTGGATTCTGCTTTTTACGACCTGGTGGAACATACACTTCAGAAAGATCCAGATTTCAGGAGAAAAAAAACCGTCATTCATGATTTACGTGAGATGACCAGCAAGATTCTTCATTATTATAAAGGAGATTTCCTCGATGAGCTCCCTGGGCTTGTTGACTTCACTGTGGTGCTGAATCTCACCTCTAAACAGAAGCATGAAGGTGAAAAGGTTAAAAAGTTTAACAGGAAGTTCAAAATAAGCTCTGCTGGTAGTGCTGTTTATCTGCATCCAAAATTGAATGTTTTCTCTGATAATGCTGCCGTAACGGATGCTAAAATAGATGAGCTCATTGATAAACTAGATGTTAAAGATGGAGTGAAGGCAAAATTCTTTCTGAACTTGCTGAACTTATGCGGTACTACTGGGGAGAAGCTGCTGGTTTTCAGCCAATACCTCCTTCCCTTGAAATTCATGGAGAGATTGGTTGTGCAGATGAAGGGCTGGAGTCCTGGAAAAGAAACCTTTATGATATCTGGTGAAACGACTTCTGAGCAACGGGAATGGTCGATGGAACGTTTCAATAACTCACCCGATGCTAGAGTCTTCTTTGGCTCCATTAAGGCTTGCGGGGAGGGCATCTCTCTAGTAGGGGCATCACGTGTCATCATCTTGGATATTCATCTCAATCCATCAGTGACCCGCCAGGCAATCGGTCGTGCATTCCGTCCTGGTCAAACGAAAAAAGTCTTTGTATATAGATTGGTTGCTGCTGAGTCACCTGAAGAGGGAGATCACATTACTTGCTCCAAGAAGGAAGGGATTGCAAAGATGTGGTTTGAATGGAATGAATATTGCGGCTATCAGAACTTTGAGGTGGGGACTGTTGACATTAAAGAATGTGGCGATAATTTTCTAGAAACCCCACTTCTAAGCCAAGATGTCACAGTTCTGTACAGAAGGTAG 2751 41.33 MDATIDFSPNSYATPNGLHYGRRKRLKLSTDGKDLPGAATFSAQKCDTPRQNKMKNSTKLIDYSDPFAINNLIDGLDCGQFGSVTKEIEALVSRKIQVLSPYISKYPTLSSMLFDLGRSRECTEEMNHQTSQLVHNLIDLEDDSDIVVRSNNVEKSRLPIVIIDSDEEESIDQRRGELVRHPFQEVLLPRPPGQSFLKDIVVVDHRASNGEKASFSVSKKKGEKATPIGESETISKKESDKGVYVGVEEDEDEVSEQANSEDDGLGDIWNDMNMALECSKDLDVAVDSSSNQETTDAVDCDHSFLLKEDIGYVCRICGVIDRGIETIFEFQYNKGKRTTRTYMYESRNKESGDVVGVKISEDDLMVTEICAHPRHKKQMKPHQIEGFNFLTSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKAENRAQQLAVLNQWVENRSILFLGYKQFSTIVGDVEASASSTACQNILLKVPSILILDEGHTPRNENTDILQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVEIPGVRKQFKAGVDSAFYDLVEHTLQKDPDFRRKKTVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSDNAAVTDAKIDELIDKLDVKDGVKAKFFLNLLNLCGTTGEKLLVFSQYLLPLKFMERLVVQMKGWSPGKETFMISGETTSEQREWSMERFNNSPDARVFFGSIKACGEGISLVGASRVIILDIHLNPSVTRQAIGRAFRPGQTKKVFVYRLVAAESPEEGDHITCSKKEGIAKMWFEWNEYCGYQNFEVGTVDIKECGDNFLETPLLSQDVTVLYRR 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9382911 9389925 - Hsped.08g09910.1 Hepe08g0991 576963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0991 916 Gene3D - 344 594 IPR038718 -
Hepe08g0991 916 CDD SF2_C_SNF 714 851 IPR049730 -
Hepe08g0991 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 878 IPR027417 -
Hepe08g0991 916 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 894 IPR001650 -
Hepe08g0991 916 Pfam Helicase conserved C-terminal domain 726 840 IPR001650 -
Hepe08g0991 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 574 IPR027417 -
Hepe08g0991 916 Gene3D - 651 889 IPR027417 -
Hepe08g0991 916 SMART ultradead3 375 583 IPR014001 -
Hepe08g0991 916 SMART helicmild6 752 840 IPR001650 -
Hepe08g0991 916 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 572 IPR014001 -
Hepe08g0991 916 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 916 IPR044567 GO:0080188(InterPro)
Hepe08g0991 916 MobiDBLite consensus disorder prediction 216 241 - -
Hepe08g0991 916 Pfam SNF2-related domain 382 668 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Hepe08g0991 916 MobiDBLite consensus disorder prediction 212 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0991 K10875 - - csv:101207775 1564.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1725 Hepe-Chr6:68224331 Hepe08g0991 Hepe-Chr8:9382911 2.17e-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56177 PF00176 SNF2_N 9.30E-20 CL0023 Hepe TR