Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1000 ATGAGCGACGCCATGTCCGACCCGGTCGACAAACCGACCAAAGGTGCCAATGAAGGTGAGATGTCGGAGGACGAGAGGAAGACGAGGCTCGCGTCTCTTAAGCAGAGAGCGATCAATGCCTCGAACAAGTTCAGGCATTCAATGAAGAAGAGAGGTAGGAGAAACAGCAGCAAAGTGATGTCGATCTCGATCGAGGATAACATCGACGCCGAGGAATTACAGGCAGTAGATGCCTTTCGCCAAGCTTTGGTTTTGGAAGAGCTCCTGCCTTCAAAACATGATGACCATCACATGATGCTTAGGTTCTTGAGAGCCAGGAAGTTTGACGTTGAGAAGTCAAAGCAGATGTGGTCTGACATGCTTCAATGGAGGAAAGAGTTTGAATCTGACACAATAATGGAGGAGTTCGAATTCAAGGAGGTAGACGAAGTGTTGAAGTACTATCCACAAGGGCATCATGGAGTTGACAAAGACGGACGACCCGTGTACCTCGAAAGACTTGGCCAAGTCGATTCAACCAAGCTCTTGGAAGTGACTACCATGGACAGATACGTTAAATATCATGTCCGAGAATTCGAGAGAACCTTTGTTTTGAAGTTTCCTGCTTGCTCCATTGCTGCAAAGAAGCACATTGATCAGAGCACAACCATCCTGGATGTCCAAGGAGTGGGACTCAAAAACTTTAACAAATCCGCAAGGGAACTCATCCAGAGGCTGCAGAAGATTGATGGTGACAACTATCCAGAGACTTTGTGCAGAATGTTCATCATCAACGCTGGATCTGGATTCAGGCTTTTGTGGAACACTGTGAAATCGTTCCTTGACCCAAAAACCACTGCCAAAATCAATGTTCTTGGCAATAAGTATCAAAGCAAGTTGCTCGAGATCATCGATCCCGGTGAACTTCCAGAGTTCTTGGGAGGTACTTGCACCTGCGCCGACAAGGGTGGCTGCATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATTGTCAAGACAAGTGGTTCAGAAGCAGCTCCTGAGGCAGCAGCTGAATCTTGCAAGTCTCCAAAGCAACCAAAAGTGTCCCCTGTTTTTGAACAAATGCCAACTACCAAAAAGTATGGTGGTGAGTATCATCAATATGACAAGTACATTCCAGTTGTGGATAAAGCTGTGGATGCAAATTGGGCACTTTCAACTGAGAAATACAATTTCTCGAAAGTGGCGGTTGTTTGGTCAGACCCATTTGCAGGGCATGACAACTACAAATGCCCAGACGGGTTCAGCAACCAGTTAGTTGGAGGAATAATGGCTGTGGTAATGGGAATAGTGACCATGGTCCGGCTGACAAGAACCATGCCAAAGAAGCTCACAGAGGCAGCCATCTACAGCAGCACCGTCTACTACGACGGTTCGATGGGGAAACATCCGGCGCTGCCGTCGCCAGCCGCCGTGCCTCTCAGCGACTACATGACCATGATGAAGCGCATGGCCGAGCTCGAAGAGAGGGTCAATTACCTCAACAATAAGCCCGCCGTCATGCCCGCCGATAAGGAGGAAATGCTCAACATTGCTTTGGGCAAAGTTGAAACTCTCGAACAAGAGCTACAAGACACCAAGAAGGCACTCGAGGAATCTCTTGCTCGAGAAGCAGAGATGACCGACTACATCGAAAAGAAGAAGAAGAAGAAGAAGATGGTGGTAATGAAGCTATCTCTAATCATGAACCCATTCCGCTGGTGA 1728 47.97 MSDAMSDPVDKPTKGANEGEMSEDERKTRLASLKQRAINASNKFRHSMKKRGRRNSSKVMSISIEDNIDAEELQAVDAFRQALVLEELLPSKHDDHHMMLRFLRARKFDVEKSKQMWSDMLQWRKEFESDTIMEEFEFKEVDEVLKYYPQGHHGVDKDGRPVYLERLGQVDSTKLLEVTTMDRYVKYHVREFERTFVLKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKIDGDNYPETLCRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDPGELPEFLGGTCTCADKGGCMRSDKGPWNDPEIVKTSGSEAAPEAAAESCKSPKQPKVSPVFEQMPTTKKYGGEYHQYDKYIPVVDKAVDANWALSTEKYNFSKVAVVWSDPFAGHDNYKCPDGFSNQLVGGIMAVVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMGKHPALPSPAAVPLSDYMTMMKRMAELEERVNYLNNKPAVMPADKEEMLNIALGKVETLEQELQDTKKALEESLAREAEMTDYIEKKKKKKKMVVMKLSLIMNPFRW 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9517621 9521762 - Hsped.08g10000.1 Hepe08g1000 576972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1000 575 Coils Coil 485 505 - -
Hepe08g1000 575 CDD SEC14 142 309 IPR001251 -
Hepe08g1000 575 MobiDBLite consensus disorder prediction 333 357 - -
Hepe08g1000 575 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 20 556 IPR051026 -
Hepe08g1000 575 MobiDBLite consensus disorder prediction 13 32 - -
Hepe08g1000 575 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Hepe08g1000 575 Coils Coil 517 548 - -
Hepe08g1000 575 FunFam SEC14 cytosolic factor 128 339 - -
Hepe08g1000 575 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Hepe08g1000 575 SMART sec14_4 140 311 IPR001251 -
Hepe08g1000 575 MobiDBLite consensus disorder prediction 1 32 - -
Hepe08g1000 575 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Hepe08g1000 575 Pfam CRAL/TRIO, N-terminal domain 92 118 IPR011074 -
Hepe08g1000 575 Gene3D - 46 127 - -
Hepe08g1000 575 Gene3D - 129 340 IPR036865 -
Hepe08g1000 575 SUPERFAMILY CRAL/TRIO N-terminal domain 66 135 IPR036273 -
Hepe08g1000 575 SUPERFAMILY CRAL/TRIO domain 140 334 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1000 K26544 - - csv:101214906 934.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1549 Hepe-Chr4:71035758 Hepe08g1000 Hepe-Chr8:9517621 1.28e-222 dispersed
Hepe06g1134 Hepe-Chr6:60331948 Hepe08g1000 Hepe-Chr8:9517621 3.82e-104 dispersed
Hepe08g1000 Hepe-Chr8:9517621 Hepe10g0618 Hepe-Chr10:7681868 1.66e-142 dispersed
Hepe08g0999 Hepe-Chr8:9507756 Hepe08g1000 Hepe-Chr8:9517621 1.38e-197 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40