Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1010 ATGGCTCAAAATCTCAAGGTTCTCATCATCGGAGGAACTGGTTACATCGGAAAATTCATAGTACAAGCCAGCGTCAAAGCCGGCCATCCAACCTATGCATTGATCCGCAAGTCTTCGCTCGCAAGCTCCGCCAAGTCTAGGATTCACAATCATTTCAAAAGCTTAGGCGTCAATTTTCTCTTCGGCGATATCCTCGACAATGAGAGTCTGGTTAAGGCGATAAAGCAGGTTGATGTAGTGATATCCACAATCGGTGGTCATATGGTTCCCTATCAACATAAGATCCTATCTGCTATCAAACAAGCTGGTAATGTCAAGAGATTCTTTCCTTCGGAGTTCGGCAACGATGCGGATCACATCAACGCGGTGGAGCCAGCGAAATCAATGTACGCTGCAAAGGGTGAATTTCGTAGGGCTGTTGAGGCTGAGGGAATCCCCCATACATTTGTGGTATGCAATTTCTTCGATGGTTACTTTCTTAGCAACTTGTCTCAGCCAGATGCAGCCGCCCCACCTAGAGACAAAGTCGTAATCTTGGGAGATGGAACTCCAAAAGTGATTTACAACAAGGAAGAAGACGTCGGAACGTACACCATCCGAGCCATAGACGATCCAAGAACCCTCAACAAGATCATGTACATTAGACCCCCAGCCAACACCTACTCGACCAATGATCTAGTCTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAGAAGAATCTACGTCCCAGAGGGGGAGGTGTTGAAGAACATCAAAGAGGCATCATATCCACTTAATATAGAATTAGCACTTTGTCACACTGCTCAAGTGAAGGGATCTCAAACCAACTTTGACATTGAACCATCTTTTGGAGTGGAAGCTTCAGAGTTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCACTACTCTAGGCCATACCCCTTCATATGTGTGGCGAAGCATTATGTGGGGAAAGGAATTGTTCCAATATGGTTATCGCGGGAGGATTGGGAATGGCCTGAGTGTGGTGGTTGGGGAAGATCCGCGTGGCTACCGCGGGAGGGCATACATTTTCCACCTCATATCCCCAACACTATTCGGGCTCAACCGGTGGCAAATCTACTCACAACGGATAACAACTGGAACGCCGCTCTGATACAACAGTTGTTTCCTGAAGATGTCTCTGTTTTGATTTTGAATATCCCTTTGTCCAAACGAGCACCGTCTGATGAGATCATCTGGGCCTTGGACACCAAAGGTATTTTCAAAGTTAAAAGTGTGTATAGACATTGGGCATGGATATCATGGCAATGGATGAGTCGAGATAGACAACGAAAAAGGAGTTCTCCGAGCGGCATCTCTTTCAATTTGCAGCTCACCGGTACACCTCCGATCAGATTTTTGTTCACCGGAAACCTTAATCCAATGCCTCAGAAGCTCAAGGTTCTCATCATGGGAGGAACTGGTTACATCGGAAAATTTATAGTAGAAGCTAGCGCCAAAGCAGGTCATCCAACTTATGCATTGGTCCGGGAATCTACGCTCGCTAACTCCGCCAAGTCTCCGATCATCGATAATTTCAGGAGCTTGGGGGTCAATTTCATCTTCGGCGATATCTTCGACAATGAGAGTCTGGTTAAGGCAATAAAGCAGGTTGATGTGGTGATATCCACCGTTGGCCGTGCTCTGTTAGCTGATCAAGATAAAATCATATCTGCTATCAAACAAGCTGGAAATATTAAGAGATACTTTCCCTCTGAGTTTGGCAACGATGTGGATCGTGTCCACGCAGTGGAGCCGGCAAAATCGATGTTTGCTGCTAAGGTTGAAATTCGTAGGGCTGTTGAGGCTGAGGGAATCCCCCATACATTTGTTGTATGCAATTTCTTCGATGGTTACTTTCTTCGCAACTTTTCTCAGCCAGGAGCCACCGACCCACCTAGAGACAAAATTCAAATCATAGGGGATGGAAGTCCCAAAGGTATAATACACATTTTTTTTTTTAAATGTTGGTGTCAGGCACCTCGACTATTCTCATGGGACATGTCTGACTATTACATTTCGTTGTCAAGTTAA 2070 45.56 MAQNLKVLIIGGTGYIGKFIVQASVKAGHPTYALIRKSSLASSAKSRIHNHFKSLGVNFLFGDILDNESLVKAIKQVDVVISTIGGHMVPYQHKILSAIKQAGNVKRFFPSEFGNDADHINAVEPAKSMYAAKGEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDAAAPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYIRPPANTYSTNDLVSLWERKIGKSLRRIYVPEGEVLKNIKEASYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASELYPDVRYTTVEEYLDHYSRPYPFICVAKHYVGKGIVPIWLSREDWEWPECGGWGRSAWLPREGIHFPPHIPNTIRAQPVANLLTTDNNWNAALIQQLFPEDVSVLILNIPLSKRAPSDEIIWALDTKGIFKVKSVYRHWAWISWQWMSRDRQRKRSSPSGISFNLQLTGTPPIRFLFTGNLNPMPQKLKVLIMGGTGYIGKFIVEASAKAGHPTYALVRESTLANSAKSPIIDNFRSLGVNFIFGDIFDNESLVKAIKQVDVVISTVGRALLADQDKIISAIKQAGNIKRYFPSEFGNDVDRVHAVEPAKSMFAAKVEIRRAVEAEGIPHTFVVCNFFDGYFLRNFSQPGATDPPRDKIQIIGDGSPKGIIHIFFFKCWCQAPRLFSWDMSDYYISLSS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9623174 9632909 - Hsped.08g10100.1 Hepe08g1010 576982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1010 689 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 269 IPR036291 -
Hepe08g1010 689 PANTHER PINORESINOL REDUCTASE-RELATED 6 307 IPR050608 -
Hepe08g1010 689 Pfam NmrA-like family 7 243 IPR008030 -
Hepe08g1010 689 Pfam NmrA-like family 480 661 IPR008030 -
Hepe08g1010 689 CDD PCBER_SDR_a 6 303 IPR045312 GO:0016491(InterPro)
Hepe08g1010 689 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 479 653 IPR036291 -
Hepe08g1010 689 Gene3D - 154 304 - -
Hepe08g1010 689 Gene3D - 476 647 - -
Hepe08g1010 689 Gene3D - 6 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1010 K23050 - - csv:101209800 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1010 Hepe-Chr8:9623174 Hepe10g0630 Hepe-Chr10:7885276 7.31e-134 dispersed
Hepe08g1010 Hepe-Chr8:9623174 Hepe08g1011 Hepe-Chr8:9634131 2.60e-95 tandem
Hepe02g0490 Hepe-Chr2:4794399 Hepe08g1010 Hepe-Chr8:9623174 4.69e-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g369 . . . . . . . . . . . Cma20g00845 . . Sed04g3918 . . Bhi05g01243 Tan02g0785 Cmetu01g0437 . Hepe02g0491 . . . . . . . . . . . . . Lsi10g00377 . . . . . . . . . . . Sed05g3616 . . . . . . . . Bhi10g01997 Tan05g1295 Cmetu11g0943 . Hepe08g1010 . . . . . . . . . . Csa02g01266 . Cme11g00122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234