Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1014 ATGTTTGTCGCGATTATTTCACACTTCAACACCCTGATCACGATCGATAGCCATCTCACGCCGCATACAAAGACAGTTTTGCCCTTCGCCAATTTCTCTCATGTCTGGTCGCGATTTTCGATCAAAAATCGCGATAAACACTTGGTCCATACTCGCGACAAGCAGTTGGTTGATAATCGTGACAAGCAGACAGTAGAAACTCGCGACAAGAAGTGGGTGCAAAATGGAGGAGGACAAAAACGTCTTTCTACGCGGCGTGAAGTGTCTAGCGATCGTGATCCAGATTTCGGTGCCACTGCCACCCCTCCTTTCTCACATATTTATATATATCTCCTCTCTTCTTCAACCAAAATCCCATTCACTTTCAGACAGATGTTCAACTCCGATTGCCACACCTTCTCGCCGGTCTCCACTCCGGCGAGTCGGGTTGATGATTTTCAGGATCTTCTTGCCTCTGCTGGGTTGCCTACCTCACCGGAGTTTCGAATCAATCTGCCTCTATCAACCACGGCCACCTCGACATGCTCGCCTCCACCCGAGGCGAACTCCACGATCGCGGGAGAGATTCCGAAGAAGAGAAAAGCGAAGAATAACAAAGAAGTGAAATCGAGCAGAGAGAAGAGAATCAAACCAATGATTGAAGAAGAAGAAGAAGATGAAAAATCAAAGATAACAGAGGAAACAGAGAGATCAAAAGCGGATTATGTTCATGTACGAGCACGTCGAGGGCAGGCCACAGACAGCCATAGTCTTGCAGAAAGAGCGAGGAGAGAAAAAATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGTTGTAACAAAATCGCTGGGAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTATCAATGAAGTTGGCTACTTTGAATCCCAGACATGTCGATGACCTCTTTGCCAAACAGGTGTTACCGACGATAGAAGTCTCACCGGAAACGGCTAATTCTTCATCCTACTTTAACCAACTCGGAATCGGCTCAAGCTCTGTAACAATCCCAGAAACTCCATTGATCAACACAGCTTCTATTACTCATTTCGAGCTCTCTTCAACTTGGGGAGAAGATTTACAGAGCCTTTATAGCATGAGCTTTGAACAAGGAGGGCCGCCATTGTTGTCGCCATCGAGCTTTTTATCGCAGCAATATTCAGGCATTGAAGATGAAAACGAAACATTTGTAGACGACAAAGTTGTTGTTCCATTTTAA 1260 44.76 MFVAIISHFNTLITIDSHLTPHTKTVLPFANFSHVWSRFSIKNRDKHLVHTRDKQLVDNRDKQTVETRDKKWVQNGGGQKRLSTRREVSSDRDPDFGATATPPFSHIYIYLLSSSTKIPFTFRQMFNSDCHTFSPVSTPASRVDDFQDLLASAGLPTSPEFRINLPLSTTATSTCSPPPEANSTIAGEIPKKRKAKNNKEVKSSREKRIKPMIEEEEEDEKSKITEETERSKADYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATLNPRHVDDLFAKQVLPTIEVSPETANSSSYFNQLGIGSSSVTIPETPLINTASITHFELSSTWGEDLQSLYSMSFEQGGPPLLSPSSFLSQQYSGIEDENETFVDDKVVVPF 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9657898 9661882 - Hsped.08g10140.1 Hepe08g1014 576986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1014 419 CDD bHLH_AtBPE_like 234 316 - -
Hepe08g1014 419 MobiDBLite consensus disorder prediction 59 75 - -
Hepe08g1014 419 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 184 342 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe08g1014 419 SMART finulus 250 300 IPR011598 GO:0046983(InterPro)
Hepe08g1014 419 Pfam Helix-loop-helix DNA-binding domain 248 295 IPR011598 GO:0046983(InterPro)
Hepe08g1014 419 MobiDBLite consensus disorder prediction 192 230 - -
Hepe08g1014 419 Gene3D - 241 314 IPR036638 GO:0046983(InterPro)
Hepe08g1014 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 311 IPR036638 GO:0046983(InterPro)
Hepe08g1014 419 FunFam Basic helix-loop-helix transcription factor 241 314 - -
Hepe08g1014 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 294 IPR011598 GO:0046983(InterPro)
Hepe08g1014 419 MobiDBLite consensus disorder prediction 59 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1014 Hepe-Chr8:9657898 Hepe10g1832 Hepe-Chr10:55051312 7.72e-37 dispersed
Hepe07g2084 Hepe-Chr7:65134691 Hepe08g1014 Hepe-Chr8:9657898 7.95e-36 transposed
Hepe02g0492 Hepe-Chr2:4842224 Hepe08g1014 Hepe-Chr8:9657898 4.89e-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56179 PF00010 HLH 3.60E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1014 - - - 0.0