Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1024 ATGATCAGCCTGGTCCCAAAGAATATGGATTGGAAAAATGCAGGTGGGGATCCATATTACAACGGAAGGAATAACAACTGGAACAACCCGAACGAACACTATGTGAATATGGCGCCAATCAGCGGCGGAGGGCAAGGAGGAGGATGGCCATCGCCGCCACCACAACCGCCGCAGGGAGTAATGAGCAGTGACTTGAGCTCGAATTTCTCGGGGCCACAAGGGCCGCCGTTGCCGCCGCCGCACCCGTCGGTGGCGTTGGGGTTCAACAAGAGCACGTTCACGTACGAGGAGCTGATGGCGGCGACGGGGGGATTCTCTTCGGCAAACTTGTTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGAGTGTTGCCCAACGGCAAGGAAATTGCTGTGAAAAGCCTTAAAGTGGGAAGCAAGCAAGGAGATAAGGAATTCGCGGCGGAAGTGGAGATCATCAGCCGCGTCCACCACCGCCATTTGGTGTCCCTCGTCGGATATTGCCTCGCCAGTGAACAGAAGATGTTGGTTTACGAATTTGTTCCTAATAACAATCTCGAGTTCCACCTTCACGGAACGGGGCGGCCACCGATGGACTGGTCGAGCAGGGTGAAGATCGCATTGGGCTCAGCCAAGGGCCTGGCCTATCTCCACGAAGACTGTCATCCTCGCATCATCCACAGAGATATCAAGACTGCAAATATTCTTATAGACATGAGTTTCGAAGCCAAGGTGGCGGATTTCGGATTGGCGAAGCTCAACCAGGACAATTTCACTCATGTATCCACTCGCGTTATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACAGAGAAATCAGATGTATTCTCATATGGAGTAATGCTTTTGGAGTTGATAACGGGAAAACGACCGGTGGATCCTACCAGAGACATGGAGGATAGCTTAGTGGATTGGTCGAGACCTCTTTGCTTGAAAGCAATGAGTGATGTAAACTACGACGTGTTGGCTGATCCAAGGCTGGAAAAGAAATATGATGCTCACGAAATGAATTGCATGGTCGCTTGCGCCGGTGCTTGCATTCGCCATTCTTCCAAACGCCGTCCCAAAATGAGTCAGGTCGTACGAGCTCTAGAAGGTGACGTGTCATTAGAGGACTTAAACGACGGAGTAAAGCCAGGGCAGAGCTCAGTCTTCGGGTCGGGCACATCGTCGGAGTACGACGCAAGCTCGTACAGTGCAGACATGAAGAGGTTTCGAAAAGTAGCGTTGGAAAGTCGCGAGTACGGAAGCAGCGAGTACGGCGGCGGCGGCACTAGCGAGTACGGCCTCAACCCTTCCGCAAGCAGCAGCGAAATCAGCCGAAAGCCCAGCCGCCTCTCCTCCCCTACCTTACCGCAACACAACGAACCCTAA 1413 52.87 MISLVPKNMDWKNAGGDPYYNGRNNNWNNPNEHYVNMAPISGGGQGGGWPSPPPQPPQGVMSSDLSSNFSGPQGPPLPPPHPSVALGFNKSTFTYEELMAATGGFSSANLLGQGGFGYVHKGVLPNGKEIAVKSLKVGSKQGDKEFAAEVEIISRVHHRHLVSLVGYCLASEQKMLVYEFVPNNNLEFHLHGTGRPPMDWSSRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNFTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGKRPVDPTRDMEDSLVDWSRPLCLKAMSDVNYDVLADPRLEKKYDAHEMNCMVACAGACIRHSSKRRPKMSQVVRALEGDVSLEDLNDGVKPGQSSVFGSGTSSEYDASSYSADMKRFRKVALESREYGSSEYGGGGTSEYGLNPSASSSEISRKPSRLSSPTLPQHNEP 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9837175 9842533 - Hsped.08g10240.1 Hepe08g1024 576996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1024 470 SUPERFAMILY Protein kinase-like (PK-like) 80 377 IPR011009 -
Hepe08g1024 470 MobiDBLite consensus disorder prediction 427 470 - -
Hepe08g1024 470 FunFam Proline-rich receptor-like protein kinase PERK1 181 388 - -
Hepe08g1024 470 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524(InterPro)
Hepe08g1024 470 Pfam Protein tyrosine and serine/threonine kinase 109 377 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1024 470 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 89 421 IPR047117 -
Hepe08g1024 470 CDD STKc_IRAK 111 379 - -
Hepe08g1024 470 MobiDBLite consensus disorder prediction 385 409 - -
Hepe08g1024 470 MobiDBLite consensus disorder prediction 393 409 - -
Hepe08g1024 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1024 470 ProSiteProfiles Protein kinase domain profile. 105 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1024 470 Gene3D Phosphorylase Kinase; domain 1 82 180 - -
Hepe08g1024 470 Gene3D Transferase(Phosphotransferase) domain 1 181 389 - -
Hepe08g1024 470 FunFam proline-rich receptor-like protein kinase PERK1 83 180 - -
Hepe08g1024 470 MobiDBLite consensus disorder prediction 33 82 - -
Hepe08g1024 470 MobiDBLite consensus disorder prediction 441 470 - -
Hepe08g1024 470 SMART serkin_6 105 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1475 Hepe-Chr2:19156125 Hepe08g1024 Hepe-Chr8:9837175 2.10e-99 dispersed
Hepe07g0675 Hepe-Chr7:7855223 Hepe08g1024 Hepe-Chr8:9837175 9.33e-189 dispersed
Hepe08g1024 Hepe-Chr8:9837175 Hepe08g2594 Hepe-Chr8:67789271 6.48e-189 dispersed
Hepe08g1020 Hepe-Chr8:9783084 Hepe08g1024 Hepe-Chr8:9837175 3.34e-36 proximal
Hepe07g0462 Hepe-Chr7:4773982 Hepe08g1024 Hepe-Chr8:9837175 7.04e-71 transposed
Hepe01g1712 Hepe-Chr1:82212479 Hepe08g1024 Hepe-Chr8:9837175 4.03e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73054 PF07714 PK_Tyr_Ser-Thr 7.80E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1024 - - - 0.0