Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1028 ATGGTAGTAGCTTCAGCTTTTACTGCATCTCTCAATTTCTCTGTCTCTTCGCACAATAGAACATCATCCATTCCTCAACTTTCTCGCAGAAATTCACACAGGGCAATAGCAGTTTCTGCCTTGCCGAGGCCCTATGGCGACTCCTCGTCAATTGGTTTATCAAGTAAATTAAGCGGGGCACCTCTAAACCTTGACGATAAAGACTTTCTTCACACCAGTACAAGTTATGGACCCATTGTGGCCAGGAAAGGTAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGGATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCTGTCAACTCCATTGTGGCACAGCGAGTCATATCGCAGCTTGTGACTCTAGCAACCATTGATGAGGATGCAGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACATACTCGGTATTAGCTATTTATGATTGTATGTCTTGGATAAAGCCTAAGGTTGGAACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAAGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCACGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCTATTGAGAAAGTACAACAATACACGGAGAGGGATCGATTTTTGTCTACTTCTGAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTGGAAACAGAATACTGA 828 44.57 MVVASAFTASLNFSVSSHNRTSSIPQLSRRNSHRAIAVSALPRPYGDSSSIGLSSKLSGAPLNLDDKDFLHTSTSYGPIVARKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSIVAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPIEKVQQYTERDRFLSTSEALEFGLIDGVLETEY 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9872173 9876392 - Hsped.08g10280.1 Hepe08g1028 577000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1028 275 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 88 274 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 PRINTS Clp protease catalytic subunit P signature 100 115 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 PRINTS Clp protease catalytic subunit P signature 171 188 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 PRINTS Clp protease catalytic subunit P signature 140 160 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 PRINTS Clp protease catalytic subunit P signature 249 268 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 Pfam Clp protease 100 273 IPR023562 -
Hepe08g1028 275 CDD S14_ClpP_2 100 270 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Hepe08g1028 275 Gene3D - 86 275 - -
Hepe08g1028 275 ProSitePatterns Endopeptidase Clp histidine active site. 193 206 IPR033135 -
Hepe08g1028 275 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 58 274 IPR023562 GO:0004176(PANTHER)|GO:0004252(PANTHER)|GO:0006515(PANTHER)|GO:0009368(PANTHER)|GO:0051117(PANTHER)
Hepe08g1028 275 FunFam ATP-dependent Clp protease proteolytic subunit 80 275 - -
Hepe08g1028 275 SUPERFAMILY ClpP/crotonase 99 273 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1028 K01358 - - csv:101213940 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0956 Hepe-Chr6:57203285 Hepe08g1028 Hepe-Chr8:9872173 4.88e-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31