Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1038 ATGGAGGACTGCTTCAGCAGCGATGAGGACTACTATGACGACTCCGATCGAGAATCTCTCCACGGTCTCGAGAACGAGGACTCTGATATTCAGTGGGCTTCTAAAGGTCCCTCGACTAAGGTCATCACAAGAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGACTTGCTGTCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTATCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACCATGATTGAGAATCAAAGTAATAGTTCCTCTGAGCCTTCCTCCATGGTGATGTGCGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTAGACTGTGGTCATTGCTTTTGTAATAGCTGTTGGACTGAACATTTCATTGTGAAAATTAACGAGGGTCAAAGTCGGAGAATCAGATGCATGGCTCACAAATGTAATGCTATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGACCGTTTTCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCACTGTGGCAATGCTATACGTGTGGAGGATGACGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGAGGCTGTAACCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTACGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTATAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTTTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACCCAGGAGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACTAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTTTGGGTCCCCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCGCTGGAACTTTCTACTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCCGCCATCAGACTGTGGTACAAGTGGAGGAATTACGGAACGCGATCGACTGACTGGCTTGAATTCGGACGAGAATGGATGCTCTTCTAGGAAACGTGCCAGAGCAGATGTTGTTACTGGCAATTTTTTTGATCTAAACTTGCCTGCCGGGGTGGTTGATAGAAACTGA 1773 43.15 MEDCFSSDEDYYDDSDRESLHGLENEDSDIQWASKGPSTKVITRESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENQSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNSCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFTLESKLKESIQEKISISEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGPLELGIHNIAPYKSKGIEKALELSTCWNSKANTTDKYPPSDCGTSGGITERDRLTGLNSDENGCSSRKRARADVVTGNFFDLNLPAGVVDRN 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9999051 10004507 - Hsped.08g10380.1 Hepe08g1038 577010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1038 590 SUPERFAMILY RING/U-box 192 260 - -
Hepe08g1038 590 Gene3D - 249 497 - -
Hepe08g1038 590 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Hepe08g1038 590 SUPERFAMILY RING/U-box 115 203 - -
Hepe08g1038 590 CDD BRcat_RBR_ANKIB1 198 262 - -
Hepe08g1038 590 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 50 84 IPR048962 -
Hepe08g1038 590 SUPERFAMILY RING/U-box 261 326 - -
Hepe08g1038 590 SMART ibrneu5 261 326 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 SMART ibrneu5 191 253 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 CDD RING-HC_RBR_TRIAD1 118 171 - -
Hepe08g1038 590 Pfam IBR domain 273 315 IPR054694 -
Hepe08g1038 590 CDD Rcat_RBR_ARI1-like 274 327 - -
Hepe08g1038 590 FunFam RBR-type E3 ubiquitin transferase 249 497 - -
Hepe08g1038 590 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Hepe08g1038 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Hepe08g1038 590 MobiDBLite consensus disorder prediction 1 27 - -
Hepe08g1038 590 Pfam Ariadne domain 330 590 IPR045840 -
Hepe08g1038 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 359 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Hepe08g1038 590 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1038 K11968 - - csv:101205066 1134.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1038 Hepe-Chr8:9999051 Hepe08g1843 Hepe-Chr8:46164162 9.19e-55 dispersed
Hepe08g1038 Hepe-Chr8:9999051 Hepe03g1020 Hepe-Chr3:55936459 1.64e-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1038 . 165 590 ARIADNE family AT4G34370 71.0 2.2e-181 632.1
Hepe08g1038 . 59 543 ARIADNE family AT2G16090 77.2 1.1e-224 776.2
Hepe08g1038 . 29 544 ARIADNE family AT3G27710 61.3 1.3e-183 639.8
Hepe08g1038 . 45 522 ARIADNE family AT3G27720 54.6 5.5e-144 508.1
Hepe08g1932 . 25 543 ARIADNE family AT1G05890 65.1 1.4e-221 766.1
Hepe08g1843 . 25 543 ARIADNE family AT1G05890 64.9 4.0e-221 764.6
Hepe03g1020 . 57 540 ARIADNE family AT1G05890 72.5 2.0e-217 752.3
Hepe08g1932 . 25 598 ARIADNE family AT1G65430 74.4 6.8e-263 903.3
Hepe08g1843 . 25 598 ARIADNE family AT1G65430 74.3 2.0e-262 901.7
Hepe03g1020 . 16 586 ARIADNE family AT1G65430 69.8 3.2e-244 841.3
Hepe08g1843 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe08g1932 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe03g1020 . 54 450 ARIADNE family AT2G31780 58.4 4.1e-146 515.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46