Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1038 ATGGAGGACTGCTTCAGCAGCGATGAGGACTACTATGACGACTCCGATCGAGAATCTCTCCACGGTCTCGAGAACGAGGACTCTGATATTCAGTGGGCTTCTAAAGGTCCCTCGACTAAGGTCATCACAAGAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGACTTGCTGTCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTATCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACCATGATTGAGAATCAAAGTAATAGTTCCTCTGAGCCTTCCTCCATGGTGATGTGCGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTAGACTGTGGTCATTGCTTTTGTAATAGCTGTTGGACTGAACATTTCATTGTGAAAATTAACGAGGGTCAAAGTCGGAGAATCAGATGCATGGCTCACAAATGTAATGCTATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGACCGTTTTCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCACTGTGGCAATGCTATACGTGTGGAGGATGACGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGAGGCTGTAACCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTACGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTATAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTTTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACCCAGGAGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACTAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTTTGGGTCCCCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCGCTGGAACTTTCTACTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCCGCCATCAGACTGTGGTACAAGTGGAGGAATTACGGAACGCGATCGACTGACTGGCTTGAATTCGGACGAGAATGGATGCTCTTCTAGGAAACGTGCCAGAGCAGATGTTGTTACTGGCAATTTTTTTGATCTAAACTTGCCTGCCGGGGTGGTTGATAGAAACTGA 1773 43.15 MEDCFSSDEDYYDDSDRESLHGLENEDSDIQWASKGPSTKVITRESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENQSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNSCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFTLESKLKESIQEKISISEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGPLELGIHNIAPYKSKGIEKALELSTCWNSKANTTDKYPPSDCGTSGGITERDRLTGLNSDENGCSSRKRARADVVTGNFFDLNLPAGVVDRN 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9999051 10004507 - Hsped.08g10380.1 Hepe08g1038 577010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1038 590 SUPERFAMILY RING/U-box 192 260 - -
Hepe08g1038 590 Gene3D - 249 497 - -
Hepe08g1038 590 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Hepe08g1038 590 SUPERFAMILY RING/U-box 115 203 - -
Hepe08g1038 590 CDD BRcat_RBR_ANKIB1 198 262 - -
Hepe08g1038 590 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 50 84 IPR048962 -
Hepe08g1038 590 SUPERFAMILY RING/U-box 261 326 - -
Hepe08g1038 590 SMART ibrneu5 261 326 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 SMART ibrneu5 191 253 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 CDD RING-HC_RBR_TRIAD1 118 171 - -
Hepe08g1038 590 Pfam IBR domain 273 315 IPR054694 -
Hepe08g1038 590 CDD Rcat_RBR_ARI1-like 274 327 - -
Hepe08g1038 590 FunFam RBR-type E3 ubiquitin transferase 249 497 - -
Hepe08g1038 590 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270(InterPro)
Hepe08g1038 590 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Hepe08g1038 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Hepe08g1038 590 MobiDBLite consensus disorder prediction 1 27 - -
Hepe08g1038 590 Pfam Ariadne domain 330 590 IPR045840 -
Hepe08g1038 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 359 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Hepe08g1038 590 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1038 Hepe-Chr8:9999051 Hepe08g1843 Hepe-Chr8:46164162 9.19e-55 dispersed
Hepe08g1038 Hepe-Chr8:9999051 Hepe03g1020 Hepe-Chr3:55936459 1.64e-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1038 K11968 - csv:101205066 1134.01