Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1045 ATGCCGACCTCCCCTTCCCCTTCCCCTTCTCCTTCTCCTTCCACTTCCTCCTCTGCCACCGCCAATTTCCCTCCTCCCTCAGCCTTACAGCCGGCAAAGCTCCCCGTCGACTTCAGCCCTCCTCTAATCGCCATGGTCGTCGTCATCGCTACCGCCTTTCTCATAGTCACTTATTCCCGTCTCATCTCCCGCCACCTCATCCCTCCCATCCTCCACCTCTTCCGCCTCTACCGCCGTCGCTGGCGTCGCTGGCGGCGGCGTCGACGGCGCGCCCGATCTTACCTTCCTTCTTCTTCCGGCGGCGACCTTGATTCTCTCCCTTACGATTCGCCTTTCTTCGAACCTACGGATGGATTCCGCGTGTTCTCCCCCTACGGCCTCGACGAATCCGTCATCAAGACGATTCCTCTCTCCGTCTACACCGCCAAGAGTCGCGACCATGAGTGCGCCGTTTGCCTCCTGGAGTTCGAAGACGACGATTACGTCCGTACGCTTCCGATTTGTTCTCACGCGTTTCACGTCGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCACTCTGTCGCGCGGTGGTTTTCCGGCCCGAATCTCCGTTCACGCCGTTGATGGCGGCCAGAATCCGCCCGAGTCTCGACGAAACGATCTTGCGTAGCATCGTATTGGAGCCGCTCGCGGAAGGTCCTTTACTACTACTACCTAATCGAGATTCTTACCACGCGACGGAATCGGAGATCACGCCGTGCGTTGACGAACCGAGAAATAGCAATTCGGCGGAGGATCAAATCAACGGAAGAGATTTCTTGTTGAAGCGATCGTATTCGTTCGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCGGCGACGGCGTCGCCCTGGAGGTACCGGCGTGGAAACTTCTGGAGCAAACGTCCGTCGCCATTCGGATCTCTGCCGAAGGCAAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCGCCTTTCTTCAGACGGAGAGGAGGATTCTTTCCACTATCGGAATCAAGCTGGAGATCATTCTCCAACGGCGTAGGGGGAGGTTCGTCGAGACGGAGCAAGTCGATGACGAGTCCTATGTTTCTCCGATCGTCAATGAGCGGAGTGGGAACGGCGGCGTTCTCGTCGAGCCGGTTGAGGTGCGGAGATCCCGAGGCGTTACTATCACCGGAGAGATTCAACAGAATTAGATGA 1227 56.48 MPTSPSPSPSPSPSTSSSATANFPPPSALQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLFRLYRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFRVFSPYGLDESVIKTIPLSVYTAKSRDHECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPLMAARIRPSLDETILRSIVLEPLAEGPLLLLPNRDSYHATESEITPCVDEPRNSNSAEDQINGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGNFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRSFSNGVGGGSSRRSKSMTSPMFLRSSMSGVGTAAFSSSRLRCGDPEALLSPERFNRIR 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10057394 10059211 + Hsped.08g10450.1 Hepe08g1045 577017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1045 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
Hepe08g1045 408 SUPERFAMILY RING/U-box 145 197 - -
Hepe08g1045 408 Pfam Ring finger domain 148 191 IPR001841 -
Hepe08g1045 408 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Hepe08g1045 408 PANTHER RING-H2 FINGER PROTEIN ATL16 14 213 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Hepe08g1045 408 FunFam RING-H2 finger protein ATL65 120 195 - -
Hepe08g1045 408 SMART ring_2 149 190 IPR001841 -
Hepe08g1045 408 CDD RING-H2_EL5-like 148 191 - -
Hepe08g1045 408 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1045 Hepe-Chr8:10057394 Hepe10g1344 Hepe-Chr10:49575316 9.25e-21 dispersed
Hepe08g1045 Hepe-Chr8:10057394 Hepe05g1648 Hepe-Chr5:66323156 1.86e-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1045 - - - 0.0