Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1052 ATGACTGATTTTTCAGCTTTTCGAACGGGCGGTTTCAAGAAGAAAATGCCGCGCCCTTATTTCCACAAGATTGTTCTCCCCTCCACTATCCAAGCTAAGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGAGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGCTGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAACATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATACGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTCCTGCTTCCGGTAGTCATCCAAGACACAGAGTCTTTGAAGAAATTGAGGACTATGACATTCCTGAAGCCAATCCTTCCAATCAGTCCTTGAATTCTGGTTCTTTACGAAATAAGCTATTTGGTGATGAGTGGAATCTGCACCAATCAAAATCTGCCAGTACGTTGCAAGCTGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCCGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACCCAGAGTTAAAAAAAGTGGAGGCAAAAAACGGAAAATTGATTCTAGTGAGCACCGTCCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGCGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTCGAGCCTGCTAATCCCTTCTGCAGGGTTGTCTTGCGACCGTCTTATCTCTACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTTCGATGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGTGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATTGTGCTCAAAGTTACAATGTTTCGTGTCATTGAAGATGCTGGACGAATGGTAAACCCGAATCCTCCTAGCATGATGAATCCACCTCCGGTGCGAAGTATTAATCAAATTAAGCTGATCAGAAATTAA 1215 41.23 MTDFSAFRTGGFKKKMPRPYFHKIVLPSTIQAKKLRIPETFVRMIRDDLSAVATLTVPAGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSSFCVFIFNLNTSEINYQSPASGSHPRHRVFEEIEDYDIPEANPSNQSLNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDVPRVKKSGGKKRKIDSSEHRPSAHSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRMVNPNPPSMMNPPPVRSINQIKLIRN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10161501 10165080 - Hsped.08g10520.1 Hepe08g1052 577024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1052 404 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Hepe08g1052 404 SUPERFAMILY DNA-binding pseudobarrel domain 273 374 IPR015300 -
Hepe08g1052 404 CDD B3_DNA 276 371 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 Pfam B3 DNA binding domain 280 371 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 MobiDBLite consensus disorder prediction 210 235 - -
Hepe08g1052 404 Gene3D - 255 375 IPR015300 -
Hepe08g1052 404 Gene3D - 13 114 IPR015300 -
Hepe08g1052 404 ProSiteProfiles B3 DNA-binding domain profile. 278 373 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 SMART B3_2 278 373 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Hepe08g1052 404 PANTHER B3 DOMAIN-CONTAINING 17 358 IPR050655 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1210 Hepe-Chr4:67399935 Hepe08g1052 Hepe-Chr8:10161501 1.50e-27 dispersed
Hepe08g1052 Hepe-Chr8:10161501 HepeContig66g0043 Hepe-ChrContig66:4313182 5.85e-38 dispersed
Hepe08g1051 Hepe-Chr8:10150550 Hepe08g1052 Hepe-Chr8:10161501 1.26e-67 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56181 PF02362 B3 5.50E-18 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1052 - - - 0.0