Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1056 ATGCATTATTTGAATCTTCTCATCTTCTTCCTCTTCCTTTCTTCCACATTAACCAAAACACGATCAGATCCACCCCCGTCTGGCGGCGGTAAGCACTTCGTTCTGGTTCACGGAGCCTGCCTTGGCGCCTGGTCGTGGTACAAGGTATCCACGCTGCTCCGATCGGCCGGCCATCGGGTGACGGCGCTGGACATGGCGGCGGCCGGAATTGATCCGAGGGAGGCGGAGAGCCTGAGATCGTTCTCCGATTACGTTCGGCCGTTGACAGATTTCATGGCGGAGGTGCCGGCGGAGGAGAAGGTGATCCTGGTCGGGCATAGCCAAGGCGGGCTGTGCATTTCGAAAGCGATGGAGAGTTTTCCGGATAAAATTTCTGTGGCTGTATTCGTAGTTGCCGCTATGCCGGGCCCATCCCTCAACGTTTCCTTTCTACTTCGACAGTTTCGGAAGAGGATAGATTTTGGGCCAGATAGCCTTTATACATTCGGTAATGGGCCCACAAATCCTCCAACAACTTTGACATTCGGCCCAGTTTTCTCGGCAACAAAACTATTCCACAACAGTCCCAAAGAGGACTTGACATTGGGGAACACATTGATGAGACCAACCCATTTGTTTGGAGAACAACAATGGAACAATGATCTTCATTTGACGACAGAGAGGTATGGCAGTGTTAAACGAGTTTTTGTTGTTTCAGATAAGGATAAGCTTATCAATAACAACTTTCAACAATGGGTTATTAAAAGAAATCCCCCTACGGCTGTGATTCAAGTTAGAGGATCAGATCATATGGTCATGATTTCTAAGCCGTTGGATCTCTTCAACAAACTGTCCCACATTGCTCAACACTATTCTTAG 858 48.6 MHYLNLLIFFLFLSSTLTKTRSDPPPSGGGKHFVLVHGACLGAWSWYKVSTLLRSAGHRVTALDMAAAGIDPREAESLRSFSDYVRPLTDFMAEVPAEEKVILVGHSQGGLCISKAMESFPDKISVAVFVVAAMPGPSLNVSFLLRQFRKRIDFGPDSLYTFGNGPTNPPTTLTFGPVFSATKLFHNSPKEDLTLGNTLMRPTHLFGEQQWNNDLHLTTERYGSVKRVFVVSDKDKLINNNFQQWVIKRNPPTAVIQVRGSDHMVMISKPLDLFNKLSHIAQHYS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10191142 10194541 + Hsped.08g10560.1 Hepe08g1056 577028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1056 285 PANTHER METHYLESTERASE FAMILY MEMBER 31 283 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Hepe08g1056 285 Gene3D alpha/beta hydrolase 30 285 IPR029058 -
Hepe08g1056 285 Pfam Alpha/beta hydrolase family 33 275 IPR000073 -
Hepe08g1056 285 SUPERFAMILY alpha/beta-Hydrolases 24 276 IPR029058 -
Hepe08g1056 285 FunFam (S)-hydroxynitrile lyase 29 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1056 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1219 Hepe-Chr4:67531603 Hepe08g1056 Hepe-Chr8:10191142 4.57e-65 dispersed
Hepe04g1223 Hepe-Chr4:67595651 Hepe08g1056 Hepe-Chr8:10191142 6.03e-28 dispersed
Hepe06g0429 Hepe-Chr6:16255847 Hepe08g1056 Hepe-Chr8:10191142 1.90e-48 dispersed
Hepe07g1735 Hepe-Chr7:59475322 Hepe08g1056 Hepe-Chr8:10191142 1.22e-90 transposed
Hepe02g0559 Hepe-Chr2:5656540 Hepe08g1056 Hepe-Chr8:10191142 9.53e-81 wgd
Hepe04g1215 Hepe-Chr4:67470338 Hepe08g1056 Hepe-Chr8:10191142 5.76e-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112