Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1060 ATGACGTCTTCAACCTTCAGTTATGTTTCTTCTTTACTCAAGGATGAATCAAAGATTTTGAAGCTTAAAAACCGAAATGCAGGGAAGGTGTTTGTTAAATGTTCTATGAACACTAAAGCTCAGAAGCCAAAGCCCGAAGTTCGCATTGGTGTTCTTGGAGCTAGTGGCTACACTGGTTCGGAGATTGTTAGGCTTCTTGCAAATCATCCACACTTTGGCATTACTCTCATGACAGCTGATAGGAAAGCTGGTCAACCGTTTTCATCAGTATTTCCTCATCTAATCACACAAGATCTTCCAGATTTGGTAGCCATCAAAGATGCAGATTTTTCTGAGGTGGATGCCATATTTTGCTGCTTGCCACATGGAACAACGCAGGAAGTTATTAAAGCCCTTCCCAAGGAGTTAAAGATTGTTGATCTTTCAGCTGACTTCCGCTTGCAAGACCCATCCGAATACGAGGAGTGGTATGGCCAGGCACATAAAGCTGTGGATTTGCAGAAAGAAGCCGTGTATGGTTTGACAGAGATTTTAAGGGATAGTGTCAAGGGTGCTCGTCTTGTAGCCAATCCTGGTTGTTATCCAACATCTATTCAACTTCCTCTTGTGCCACTAATAAAGGCTAATCTAATTCAACTTGGGGGCATCATTATTGATTCTAAGTCTGGTGTTAGTGGAGCTGGACGTGGTGCCAAAGAAGCAAATTTATACACCGAAATAGCTGAAGGCATTTATTCTTATGGGATTACCCGTCATCGTCATGTTCCCGAAATTGAGCAGGGACTGTCTGAAGCTGCAAAATCAAAAGTAACCGTCAGTTTTACACCACACCTAATGCCAATGATTCGAGGTATGCAATCAACTATATATGTTGAAATGGCTCCAGGAGTGACAACTGAAGATTTGCACCAACACTTAAAAGTCTCCTATAAGGAAGAAGAATTTGTACGCATCTTGGAGAAAGGAGTCGTCCCTCGCACTCATAACGTTCGAGGGTCTAATTATTGTCACATCAACGTCTTTCCCGATCGAATTCAAGGAAGAGCTATCATTGTTTCCGTTATCGATAATCTTGTGAAGGGGGCTTCAGGTCAAGCTCTACAGAATCTCAATGTGATGATGGGATTCCAAGAAACTACAGGGCTCCTTTACCAGCCCCTGTTTCCTTAA 1170 42.48 MTSSTFSYVSSLLKDESKILKLKNRNAGKVFVKCSMNTKAQKPKPEVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQPFSSVFPHLITQDLPDLVAIKDADFSEVDAIFCCLPHGTTQEVIKALPKELKIVDLSADFRLQDPSEYEEWYGQAHKAVDLQKEAVYGLTEILRDSVKGARLVANPGCYPTSIQLPLVPLIKANLIQLGGIIIDSKSGVSGAGRGAKEANLYTEIAEGIYSYGITRHRHVPEIEQGLSEAAKSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTTEDLHQHLKVSYKEEEFVRILEKGVVPRTHNVRGSNYCHINVFPDRIQGRAIIVSVIDNLVKGASGQALQNLNVMMGFQETTGLLYQPLFP 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10237097 10242623 - Hsped.08g10600.1 Hepe08g1060 577032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1060 389 Gene3D - 48 375 - -
Hepe08g1060 389 ProSitePatterns N-acetyl-gamma-glutamyl-phosphate reductase active site. 188 204 IPR023013 GO:0003942(InterPro)
Hepe08g1060 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 213 IPR036291 -
Hepe08g1060 389 NCBIfam N-acetyl-gamma-glutamyl-phosphate reductase 47 389 IPR000706 GO:0003942(InterPro)|GO:0006526(InterPro)|GO:0070401(InterPro)
Hepe08g1060 389 Gene3D Dihydrodipicolinate Reductase; domain 2 191 357 - -
Hepe08g1060 389 PANTHER N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED 42 389 IPR050085 -
Hepe08g1060 389 Hamap N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 47 383 IPR000706 GO:0003942(InterPro)|GO:0006526(InterPro)|GO:0070401(InterPro)
Hepe08g1060 389 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 193 357 - -
Hepe08g1060 389 Pfam Semialdehyde dehydrogenase, dimerisation domain 193 357 - -
Hepe08g1060 389 SMART Semialdhyde_dh_3 48 185 IPR000534 GO:0016620(InterPro)|GO:0051287(InterPro)
Hepe08g1060 389 FunFam N-acetyl-gamma-glutamyl-phosphate reductase 191 357 - -
Hepe08g1060 389 Pfam Semialdehyde dehydrogenase, NAD binding domain 48 184 IPR000534 GO:0016620(InterPro)|GO:0051287(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1060 K00145 - - csv:101213242 724.931
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g472 . . . . . . . . . . Cma02g00436 . Car02g00290 . . . . . . . . . . . . . . . . . . . . Cone3ag1119 . Lsi10g00316 . Chy11g00431 . . . . . . . . . . Cmo02g00438 . . . . . . Cpe05g01227 Bhi10g02069 . . . Hepe08g1060 . . Cla09g01722 Cam09g1816 Cec09g1878 Cco09g1970 . . Cre01g0689 . Csa02g01205 . Cme11g00503
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010951 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31