Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1071 ATGGATTCCCAATCCCATCAAGAAGAAGTAGTTTTCGAATTCCCGCCGGCCTTCCGCGTCTTCAAAAGCGGCCGCGTCGACAGGCTCGTTTTCAACGACCGAATTCCGCCCTCCGCCGATCCACTCACCGGCGTCCAATCCAAAGACTTCCTCATCGACCCACAAACCGGAGTCTCCGTCCGGATCTACCTTCCCAAACTACTTCCCGATTCCACCAACAAACTTCCGCTCCTCATTTACATCCACGGCGGCGCCTTCGCCATCTGCTCACCTGCCAATCCCATGTACCACCGCCATCTCCTCACCCTCGCCGCCGAGGCCAACGCCGTCGCTCTCTCCGTCGAGTACCGCCTCGCGCCGGAGCATCCTCTCCCGGCGGCCTACGACGACGCCTGGACGGCAGTGGAGTGGGCGGCCTCGCACTCCAATCGCGATGGCCCCGAGATTTGGTTGAACGAACACGCCGATTTCAACCGCGTTTTCGTCGTCGGGGACAGCGCTGGCGCCAACATTTCGTACAACGTGGTGGGCCGGGCCAGCGAGAGCGATAATGGGCTGAAGGGAATGAAGATAATTGGGCTGGGCCTGGTCCATCCGTTTTTCATGATCGACAAGCCCGATAAGCTGATAGAGTATATCTTCCCGACGTCGGCGGGTCTGGAGGATCCGAGGATGAACCCGTGGGCCAACCCGGGACTAGGTAGGTTCAAGTGCAATCGGGTGCTGATATTCGCGGCGGAGAATGATAATCTCAATGATAGGGCACGTGGGTTTCACGCGGCGTTAACGGAGAGTGGGTTTTCGGGATCGGTGGAGATGGTGGAGACTCCCGGCGAGGACCACACATTCCATTTGTTTAATTCCGACACTGACAAAGCCGTTGCGTTGGGGAAAAAGCTCGCTTCCTTTATCCAATCATCATAA 924 57.58 MDSQSHQEEVVFEFPPAFRVFKSGRVDRLVFNDRIPPSADPLTGVQSKDFLIDPQTGVSVRIYLPKLLPDSTNKLPLLIYIHGGAFAICSPANPMYHRHLLTLAAEANAVALSVEYRLAPEHPLPAAYDDAWTAVEWAASHSNRDGPEIWLNEHADFNRVFVVGDSAGANISYNVVGRASESDNGLKGMKIIGLGLVHPFFMIDKPDKLIEYIFPTSAGLEDPRMNPWANPGLGRFKCNRVLIFAAENDNLNDRARGFHAALTESGFSGSVEMVETPGEDHTFHLFNSDTDKAVALGKKLASFIQSS 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10433906 10434932 - Hsped.08g10710.1 Hepe08g1071 577043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1071 307 PANTHER ARYLACETAMIDE DEACETYLASE 14 300 IPR050466 -
Hepe08g1071 307 SUPERFAMILY alpha/beta-Hydrolases 10 305 IPR029058 -
Hepe08g1071 307 Gene3D alpha/beta hydrolase 20 307 IPR029058 -
Hepe08g1071 307 Pfam alpha/beta hydrolase fold 78 284 IPR013094 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1071 Hepe-Chr8:10433906 Hepe08g1073 Hepe-Chr8:10452831 2.04e-177 dispersed
Hepe08g1070 Hepe-Chr8:10425535 Hepe08g1071 Hepe-Chr8:10433906 3.07e-174 tandem
Hepe08g1071 Hepe-Chr8:10433906 Hepe08g1072 Hepe-Chr8:10438752 1.46e-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g443 . Blo15g00733 . Bda08g00848 . . . . . . Cma02g00444 Cma20g00893 Car02g00301 Car20g00770 . . . . . . . . . . . . . . . . . . . . . Lsi10g00302 . Chy11g00444 . . . . . . . . . . Cmo02g00453 Cmo20g00900 . . . . . . Bhi10g02087 . . . Hepe08g1071 . . Cla09g01703 Cam09g1798 Cec09g1861 Cco09g1952 . . Cre01g0708 . Csa02g01192 . Cme11g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78