Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1091 ATGGATTCTTCTTCGAATCGCGTTCGAGTAGGGTACGCTTTCCCCCCAAACAAAGAGCGGAATGTTATTCGTCCGTCTTTGATCGACTACGCTAATCTCCACGGCGTCGACCTAGTCCGCATCGACCTCCAAACGCCGCTCCTCCACCAAGCTCCGTTTCACTGCATCATCCACAAGCTCTACGACGATTCCTGGGCAGAGCATCTTGACGATTTCGCCTCCAAGAATCCAGACGTCGTTATCGTGGATAAGCCGGAACTAATCTCGCGACTCTACAACAGAGTATCGATGCTCGATGTGGTGAACCAGGTGACGGTTTCGGAGAGCAGCGTGAGAATCGAAGTGCCGAAACAGATCGTATTAAACCAGGAGGATGGAGAAATCGATTCGATTAAGGATTTGGAGGTGAGATTTCCAGTAATTGCGAAGCCGTTGGAATCGAACGGAAGTGCGAAATCGCACGAAATGTCACTCGTGTTCAATCGACGCGGATTGAAGGATTTGGATAAGCCAGTGCTTCTGCAGGAATTTGTGAATCACGGCGGAGTAATGTTCAAGGTATACGTCGCGGGAGAGCAATCGGTATGCGTGAAGCGGAAATCGTTGCCGGATGTGGCGGAGACGGAGGAGGAATTGGAGAAAAAAACAGAGGTCGCAATGAAATTTTCGCAGATATCTAGAGCAGAGGAGAAGAACGAAAATTGCAATGGTGGTGAGGAGAAGGCGGAGGAGATTGAAATGCCGCCGGAGAAGGTGGTGAGGGAGGTATCGAGAGGGCTGAAGGAAGCGATGGGGATTCGGCTGTTCAATTTCGACATGATTAGGGATCGGAATGGTATATACTATGTGATAGACATAAATTACTTACCGGGATTTGCAGTTCTGCCGGAGTACGAGCAGTTTCTGACGAAGTTCTTGAAGGAAGTTACGGAGAAGAAGAAGGTGGAAGAGGAGGATTCCGCCATTGGAGACGATCAAGTGAAACCACGGTGCTGCTGTTTCCAAAGTCAAGGCACTATACTCGAGGGGCATTAA 1035 49.37 MDSSSNRVRVGYAFPPNKERNVIRPSLIDYANLHGVDLVRIDLQTPLLHQAPFHCIIHKLYDDSWAEHLDDFASKNPDVVIVDKPELISRLYNRVSMLDVVNQVTVSESSVRIEVPKQIVLNQEDGEIDSIKDLEVRFPVIAKPLESNGSAKSHEMSLVFNRRGLKDLDKPVLLQEFVNHGGVMFKVYVAGEQSVCVKRKSLPDVAETEEELEKKTEVAMKFSQISRAEEKNENCNGGEEKAEEIEMPPEKVVREVSRGLKEAMGIRLFNFDMIRDRNGIYYVIDINYLPGFAVLPEYEQFLTKFLKEVTEKKKVEEEDSAIGDDQVKPRCCCFQSQGTILEGH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10754119 10755357 + Hsped.08g10910.1 Hepe08g1091 577063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1091 344 FunFam Inositol-tetrakisphosphate 1-kinase 119 219 - -
Hepe08g1091 344 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 109 307 IPR040464 -
Hepe08g1091 344 ProSiteProfiles ATP-grasp fold profile. 105 315 IPR011761 GO:0005524(InterPro)|GO:0046872(InterPro)
Hepe08g1091 344 Gene3D - 118 217 - -
Hepe08g1091 344 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 84 296 - -
Hepe08g1091 344 Gene3D - 218 312 - -
Hepe08g1091 344 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 7 316 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0032957(InterPro)|GO:0047325(PANTHER)|GO:0047325(InterPro)|GO:0052725(InterPro)|GO:0052725(PANTHER)|GO:0052726(InterPro)|GO:0052726(PANTHER)|GO:0052746(PANTHER)
Hepe08g1091 344 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 9 88 IPR041429 -
Hepe08g1091 344 PIRSF ITPK 1 321 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0032957(InterPro)|GO:0047325(InterPro)|GO:0052725(InterPro)|GO:0052726(InterPro)
Hepe08g1091 344 Gene3D - 1 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1091 K00913 - - csv:101223134 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1091 Hepe-Chr8:10754119 Hepe10g0391 Hepe-Chr10:4274043 4.26e-55 dispersed
Hepe08g1091 Hepe-Chr8:10754119 Hepe08g1092 Hepe-Chr8:10766320 2.17e-115 tandem
Hepe10g0720 Hepe-Chr10:9792303 Hepe08g1091 Hepe-Chr8:10754119 1.60e-21 transposed
Hepe06g1788 Hepe-Chr6:68941906 Hepe08g1091 Hepe-Chr8:10754119 1.96e-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g439 . . . . Bpe07g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00292 . . . . . . . . . . . Sed01g0355 . Cmo20g00902 . . . . . . Bhi10g02090 Tan05g1437 Cmetu11g1551 . Hepe08g1091 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013619 0 1 0 0 0 1 0 1 1 1 1 1 2 1 1 2 1 0 0 1 1 1 1 1 1 1 1 2 1 0 25